3300011123: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, total

Overview

Basic Information

• IMG/M Taxon OID: 3300011123
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121704 | Gp0173497 | Ga0151660
• Sample Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, total
• Sequencing Status: Permanent Draft
• Sequencing Center: Toyama Prefectural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49525524
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Dna From Seawater And Marine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.1316
  • Long. (^o): 137.71844
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F015742	Metagenome / Metatranscriptome	252	Y
F043446	Metagenome / Metatranscriptome	156	Y
F060030	Metagenome	133	N
F065254	Metagenome	128	Y
F080062	Metagenome / Metatranscriptome	115	Y
F085725	Metagenome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151660_1005391	Not Available	696
Ga0151660_1026687	Not Available	528
Ga0151660_1027203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1466
Ga0151660_1041396	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	529
Ga0151660_1069087	All Organisms → cellular organisms → Bacteria	700
Ga0151660_1084626	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	604

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151660_1005391	Ga0151660_10053911	F015742	MDSKKAYEQLKEEIVDRESAYLCTELERALDRIITWTDPLDETMFRDIKESAI
Ga0151660_1026687	Ga0151660_10266873	F000352	MRTIKLTENDCTFVHYVLRMYAQQTPGLDQEDKEEIREVAAKFK*
Ga0151660_1027203	Ga0151660_10272032	F085725	MNLLLVSFLLLISAVAIGFYLVYLGLHQRKRSPGLGLTHAGLALSGFIVLFIEIFTGPIDKLNNVAGLLLFLAILGGGMVFALNEENKPPSMAAVTAHAIMGLVGISLLIINLF*
Ga0151660_1041396	Ga0151660_10413962	F080062	VRLTLPKVLWLVAAIAIAWGLNTWRQDAALRDLRAAQEGDRDAAERSVERSLREGRCELHEAREYIGSSDTRQYVRRPEYVESRSEEHTSELQSHLKLVCR
Ga0151660_1069087	Ga0151660_10690872	F065254	LWNAPVALNKGYEQAEKTSVAAETPLGGCPITNFKSTPPFNRMMQSRRGGIAAFKKRPNGPALARFKGYN*
Ga0151660_1084626	Ga0151660_10846261	F043446	KEKFRQTNLSRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKSI*
Ga0151660_1084626	Ga0151660_10846262	F060030	MIQKLLVEEGMKRGLKVSREYSVSVLGYDFIGLISRLAIFFITGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQVISVLIVVME