3300011102: Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant re-assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300011102
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114039 | Gp0109960 | Ga0151466
• Sample Name: Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant re-assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Sao Paulo State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 270989624
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Composted Filter Cake Microbial Communities From Nova Europa, Brazil, From A Cane Sugar Milling Plant
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Filter Cake Produced In Cane Sugar Milling Plant → Composted Filter Cake Microbial Communities From Nova Europa, Brazil, From A Cane Sugar Milling Plant

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Nova Europa, Brazil
• Coordinates
  • Lat. (^o): -21.818963
  • Long. (^o): -48.614275
  • Alt. (m): N/A
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044526	Metagenome	154	Y
F088555	Metagenome	109	N
F088752	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151466_1017901	All Organisms → cellular organisms → Bacteria	1961
Ga0151466_1031693	All Organisms → Viruses → Predicted Viral	1432
Ga0151466_1103982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	680

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151466_1017901	Ga0151466_10179011	F044526	QVVLQAEKGKPVTLNIPRGYIEQPKDPEGVLPNVVLRIAAKDFSDAESFVPNSEVRVLIEPYASAVDAAHERHAAALRKHRSSVEALKKSAELSKGGLTAYTYPNGNEDAEAYYLKSKDGNVFVECRRSVCRAFRTWKEKRVHVRFDYQPVSTSDVEQVSAAVDRMLQTF*
Ga0151466_1031693	Ga0151466_10316931	F088555	MYFDETVSSLVRDDISPTLGSPDSYEGPGTGGMVQRKLYLYSDNFQRTYSQVQLTSLNSDSQVQIRYAVDQNGSPGTWQTTLDLPSGNYQTPVPVWVQVTFAPTNEPTLRTDLRHWLQWLEAVAG*
Ga0151466_1103982	Ga0151466_11039821	F088752	MKGLQSVYNQITNILKENNVLMNITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDE*