3300010982: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 9)

Overview

Basic Information

• IMG/M Taxon OID: 3300010982
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085735 | Gp0095235 | Ga0138322
• Sample Name: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 9)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 682538235
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: USA: Illinois
• Coordinates
  • Lat. (^o): 40.102108
  • Long. (^o): -88.227299
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003473	Metagenome / Metatranscriptome	484	Y
F008288	Metagenome / Metatranscriptome	335	N
F017947	Metagenome / Metatranscriptome	237	N
F037528	Metagenome / Metatranscriptome	167	N
F066347	Metagenome / Metatranscriptome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138322_10072829	Not Available	1307
Ga0138322_10074030	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba	1298
Ga0138322_10198167	Not Available	808
Ga0138322_10323960	Not Available	619

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138322_10072829	Ga0138322_100728291	F003473	MSSLIKIFLSLFLIQSIFALKLQLIDEDYVKVQIGYPPQEYKLIVDPVSPLTYLFKENPSPTKMEGLLDKPITFSNVFGNFTGVWKNDFFYLTDDRLMNFRFDYVEITKKDTKLLCDGVLGLGYSFEQSYGNIYEVLEKMYNVFPSKKVFSYDKKKMQITLGEIPERSNYNPTVFKIYEKKDMPGVFLKLNKLRFMTDYDQTKYLSEEDLNDDALLTLLPVIIAPKHRLHNLYTNYTTIFNTSKSTYSKKGVDVNMTKFYTDFYLTEPNKHMDYTELVFDRMAYKFRCFEEKNGKFRPKIRFGNQQNYLFKYWVVGVDVIGVDRFDFNFEEGTVKLYSKPSYDITKSKPQLLRDVFVYMTIVCVMLCFGFLVFCQKKKPSEIEPGKELDELL*
Ga0138322_10074030	Ga0138322_100740301	F066347	TSTHTNVQVSLGALDVIVQVVAEGEHNITSVLTLVGLVVTSLKKERGIAVSVEVADTSKLGWRILQVSIASRSTGHVLAELVEEHMAENDIILIIKVDGEDHDDTITVLLEPDRLVGAVVDLNDFATRSALRSLVHHLVKNRGKKVAGHARSKTRDLGCISLREDLANRDGDGEVVLGLGTSEKAAVHLLEVFLATVCLNLIPALARDGNVKLALVGPQMPDNLVEICDCDIDFLSLLSDELGVDDIVNDAVVSLKSQRGCHFL*
Ga0138322_10154769	Ga0138322_101547691	F008288	KMSFLNYTTQQLQGGGKYSVKTKIGNWYEDMVMDETKFKDYIRLKESNNLMVAQKENKYANLLKKIPLEPFNGFLTTGHYFMLRNHKTNGFMVLDIDDKNINYNAAFAVTTSPLMTFACPRSMFKFEKYEPLKHYNCLPEKQAIDNVCYHDKIRIVCHPDVYETPLYLFSPLISPFSYSRFSRNQEVLISSEENFFNCWTIEHIDPNKRLEVKGQPVPSNEPFLIRHDQTGKLLSSDLIDYFNDFGHEYEMCANNYLPYGRYQKILPYDMHEDNVAEVQCNRIEKPENIWSIVDSMNQ*
Ga0138322_10198167	Ga0138322_101981671	F017947	MLEVEIDGVKTHVPQCTCGKCIVRRERKTQDPIIPYNKDLSSIYTSDYPPKKSVKDNGFLNRAKLTGFENSFKETLPGGLTSTMKGDYIPYDVKLEKPKQTTYDLYSGPFTGPTTNEVNYLNWGSSAAGKTKQSTFPDIKIPLRGNSDYNDNYIKYPTESYKKREPFKVTDNQKPHGKLADDTTYNTDFIPHESNNERFKPLMSSNFINSDNPPDNFDTTYKINYVNYDDKMCRLRKYLNARGMRYLVI*
Ga0138322_10323960	Ga0138322_103239601	F037528	MLQTNSIFIKILLISLLYQNILSQRISQDLLGGWGEKFIPVPPSQDFELCIDTIEKYFTSEGNDLAELDIIPIGFFTQSNIGINYRIIIAMKKKSDSAPSIYDFLLRKSERDYMKIISNQNPEESSVKLNEKEEKKMKTAMVKFYFEKLYKVSSMEIQYEYHNINGLNKYAIYDVNAELKNDKEAVNKRLIIVYRNDKTFTVES