Basic Information | |
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IMG/M Taxon OID | 3300010979 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085735 | Gp0095235 | Ga0138318 |
Sample Name | Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 5) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 535297083 |
Sequencing Scaffolds | 1 |
Novel Protein Genes | 1 |
Associated Families | 1 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis |
Type | Host-Associated |
Taxonomy | Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
Location Information | ||||||||
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Location | USA: Illinois | |||||||
Coordinates | Lat. (o) | 40.102108 | Long. (o) | -88.227299 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013600 | Metagenome / Metatranscriptome | 269 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0138318_1050305 | Not Available | 1496 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0138318_1050305 | Ga0138318_10503051 | F013600 | FLCVVVVNRNTMRSFALVLLALVISASAIDQSRFIIASTEELDQYGKLESKEDVLAFLKGFAYGLDVVMGDPEACIRDIKNMTSDFNDAVQLIAYGIKHLSVKSVAQGLFAFADGVEKLADGFKACGLEETAESIIKIVTEIKEGQVQALIKDEIMHIISHGRELIQLFKSLVADWKDKDFYNAGESAGEIIGILIDQENDQVAVSATPNDIFLLIRGVAEGMGSTMGDPSGCARDIDIIIADMNACISDFVTGIKKISVKTIERALLEFADAIETVGKSFEACGLTGLEQAIRDIVADIRAGKVFQVIAREAVHIFVHGTELIDDFKSVGTLWKAGSFEECGKKVGEIIGFLVVIPPAQQ* |
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