3300010978: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 7)

Overview

Basic Information

• IMG/M Taxon OID: 3300010978
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085735 | Gp0095235 | Ga0138320
• Sample Name: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 7)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 473080356
• Sequencing Scaffolds: 22
• Novel Protein Genes: 22
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Mastigamoebidae → Mastigamoeba → Mastigamoeba balamuthi	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: USA: Illinois
• Coordinates
  • Lat. (^o): 40.102108
  • Long. (^o): -88.227299
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003473	Metagenome / Metatranscriptome	484	Y
F004661	Metagenome / Metatranscriptome	428	Y
F006777	Metagenome / Metatranscriptome	364	N
F006970	Metagenome / Metatranscriptome	361	Y
F012836	Metagenome / Metatranscriptome	277	Y
F013733	Metagenome / Metatranscriptome	268	N
F014928	Metagenome / Metatranscriptome	259	Y
F033661	Metagenome / Metatranscriptome	176	N
F034020	Metagenome / Metatranscriptome	175	N
F037524	Metagenome / Metatranscriptome	167	Y
F043183	Metagenome / Metatranscriptome	156	Y
F051620	Metagenome / Metatranscriptome	143	Y
F057817	Metagenome / Metatranscriptome	135	N
F071832	Metagenome / Metatranscriptome	121	N
F088021	Metagenome / Metatranscriptome	109	Y
F096413	Metagenome / Metatranscriptome	104	N
F100169	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138320_1000546	Not Available	804
Ga0138320_1019150	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	985
Ga0138320_1029592	Not Available	972
Ga0138320_1033436	Not Available	1206
Ga0138320_1063735	Not Available	1163
Ga0138320_1101713	Not Available	920
Ga0138320_1162574	Not Available	667
Ga0138320_1188096	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Mastigamoebidae → Mastigamoeba → Mastigamoeba balamuthi	696
Ga0138320_1209445	Not Available	795
Ga0138320_1227630	Not Available	656
Ga0138320_1311185	Not Available	735
Ga0138320_1313167	Not Available	827
Ga0138320_1320231	All Organisms → cellular organisms → Eukaryota	625
Ga0138320_1430796	Not Available	738
Ga0138320_1510338	Not Available	565
Ga0138320_1655893	Not Available	686
Ga0138320_1660992	Not Available	719
Ga0138320_1663243	Not Available	755
Ga0138320_1687916	Not Available	519
Ga0138320_1754543	Not Available	700
Ga0138320_1774368	Not Available	641
Ga0138320_1832065	Not Available	705

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138320_1000546	Ga0138320_10005461	F006777	MSKNYPLEEDKIYSNKSKDARTWICGNKHVLYPEHIPGYTGHITGIESNLKKGSNIYGTSYSKASSIAVKGAFCNMIDLPVSERYTSEMKERFQKPKMRSFSEAKVLQKEEEIKKSKMGDGFNLINTENQKDRDMTQGLSESFKNAVFMKRNKVEDLPYILGYTGFRPGVTSQSYFGKSFKNESIRSFNNFLEKQHS*
Ga0138320_1019150	Ga0138320_10191501	F051620	LMSQLPEQILNQPAAQFLGTLGQGMGMIPPAAYQPNIPQQIPQQQNMQIGVGGEDQKNTEKRRRRSKHEQEGRDFVCDFQNCGKSFLSQPALNNHKKTKHPELLEGQPKRGRGRPRKYPPKAAGDFESTKYDSFFNNAPRCPEEGKTIDVKNVVNQVFDLIYKGSYMEKLFSHPKSFEENPILKNLVDDAIIDAQKTKNSKSCDEVFYEYLKSFKDKTNEKYFSLLIKFVLLFRECYDKSKTKDSKEEEKKAVTDHVPPEGLPDLCNEFYGEFMEPNNFFDLDENDRNEIIEIIQHFCIWLFKNEYTKSKLSLAN*
Ga0138320_1029592	Ga0138320_10295921	F057817	KMEANLEKPNEEFQLGNKVPNSFEELNAMTNNRYSNNIEEKPQLESTLRFARSMNLPKFTSTVKSQNCQENQKYEIPESEYIWNPPYLKKTQIFPSYVIASEYPTLQMKKEFTKRLRERSCDPNEYTKNVNVEDFVKYDKEYLWRTSNDIMNRYVPTIERGSNDASTGLKTNISPLLAKRQKEMENKEYFDPLKKYAQIAEDEGNHVERNPLNNHKLIQNSYFPMSRLVGSYWDKVDKESYFKNRYDKLSFDPMNRESGYSTNLRNNIDFKNMFDKNTEAGQPHPKEDYKQTEYRNMYWRNKGFPYQGGKKPIAHTAATLNIEH
Ga0138320_1033436	Ga0138320_10334361	F096413	MAEVQTFTHDVPMRDDKENKTYSVQYQIDIPVVIFSYKVKRGESEVVFETRYAYNSMFEKFQIKKEEVDETNPEKIVKALEKCFETKKVQLEIFQKTNYSIDFRTEDDKTIFKAFLEPKVRCNQAPLKAKPDQKVNIQWEIDIPYVTFTYTDENNVVFEEKMEYDCMFAKFGMQQKDEDKKNGISLQSKITGLFYQNKVLFEPFQIKYYDIEFRGENDNTLFKVFFKPKMNSFVVSMKDEPDKKFKIEWVVDIPNVIFTYKEMKDGKELLYRDQLNYDCTFEKFGIKKEEKDVKNPTALTNVIKKYFEDGKVRVLIFQKVYYALEFLGEENKTLFQVFLRY*
Ga0138320_1063735	Ga0138320_10637351	F003473	SSNKLKILISFFLISSIFSLKLQLIDEDYVLVQIGLPPKSYKLLVDPIGSFTYLFKSLNSTSTLPGEVSIPLEFSNVLGKFKGVWKNDFFYLTDDRLMNFRMDYLEITEKDTKFKCDGVLGLGYSFSQSYGNIYDVLAKMYNVFPSKKVMSYDKKKMQITLGEFPERSNYNPTIYKIYEKKEYPGTFLQLDKLRFMTDYDQTKYLSEEDLKDDALLTLLPVVIAPKHRLKNLYINYTTIFNTTNSTFSKKGVNKNETKFYSDFYLTNPNKHMDYIELVFDRMAYKFRPFEKKEDGKYRAQIRFGNDEKYLYKYWIVGIDVIGVDRFDLNFEDNTVKLYSKPSYDITKSKPQLLRDVFIYMTIVCVMLCFMFLVFCPKKRAKDIKPGE
Ga0138320_1101713	Ga0138320_11017131	F033661	LTFSKSKTFFDLCIKFKEIFLFYIEKILNQKFNLNFYSNEINKNKNLKQNDFTPICYLINTCDYCISTIGALTSSIQEKIEKYQNNFSYDDIVGKFREIYKKCFDLLSTDLKNSVENQLQTGIVKKSWLFSTNKPQDTNSFVIGISKILNDEFNLIKNILQEEFLCHYLNVVPKIVSESLITYLYKIKKIDEVGAQDIYTNIGELKNTILNLYYIVVKPVPGQNKENDSRYNCLNMILKKEMSRVENRLKTLGSIVAEFGNAYKNFVEDKSREDFDKLLQLRGIRKNDIVDYEKIFI*
Ga0138320_1162574	Ga0138320_11625741	F006970	HAYSTPWDQPQYKEEIVSNQKYSKIENVFEIPYLKHTPAYKTGEFFQRFDMCVQKKKNLKQTLDDITKRYNDIMAIFNKELDKTFAGNPTKEQKDRMIEYMIKMLELYHESREVEHYDDIFSKEVEKNKMTFSGAQKEKYDDGMAILKKGFPFQLTVTYSKMNDEFRKIINRCFLEKNMRFYKPKEIEDVTLYKERLMYKTN*
Ga0138320_1188096	Ga0138320_11880961	F037524	MIKKTRNLDVVSVDKLAVDDVSGLQDDRSGRLGVVLALVGSELATAAGHLSIEQRARTMGATATAGHDLKKIAIVRKTILAEGLDLLEGIIRETIADNRSDRVRILLRVLYTDRSHSRSHTSDDRIHTRLSTANIRILLIIRKIRLEGHIARAKDGIEVLEGENVVDLLLTKTLSELGDARTNKDSLAARVALLADVADVVHGRASVADGRL
Ga0138320_1209445	Ga0138320_12094451	F006777	KNMEKKGYYREFYPGYMGHIPYKYEVIGMTVGATNSHIKSLLRKEPDYEKTFVPSIKNDYTYYNKDYFTESMSKKYPLEEDKIYSNKSKDARTWICGNKHVLYPEHIPGYTGHITGIESNLKKGSNIYGTTYSKASSIAIKGAFCNQYDLPVNERYTSEMKDRFQKPRMRSFSEARALQKEEENKRNQNGLGYNIIDNPKDREMTKGLSESFKNAVFMKRKHIETVPYILGYTGFRPGVTSQSYFGKSFANESMKSFNDFLEKQ
Ga0138320_1227630	Ga0138320_12276301	F013733	IWNPPYLKKTQIFPSYVIASEYPTLQMKKEFTRRLRERSCDPNEYTKNVNVEDFVKYDKECLWKTSNDIMNRYIPTIERGKDDASTGLKTNISPIMAKKQKEMENKEYFDPLKKYAQIAEDEGNHIERNPLNNHKLIQNNYFPMSRLFGSYWDKVDKESYFKNRYDKLSFDPLNRESGYSTNLKSNIDFKNMFDKNTEAGQPHPKEDYKQTEYRNMYW
Ga0138320_1311185	Ga0138320_13111851	F006970	PVESDNPLLNKKIVKSTLKTHAYSTPWDQPQYKEQIVSNQKYSKIENVFEIPYLKHIPAYKTGADFFTRFNMCIEKKKNLKKTLDDITKRYNDIMAIFNKELDKTFAGSPTQEQKERMMEYIIKMLELYHEFREVEHYDDIFSKEVEKTNMTFSGAQKEKFEDGMAILKKGFPFQLTVTYSKMNDDFRKIINRCFLEKNMRFYKPKEIADVTLYKEYSCIRLIK*
Ga0138320_1313167	Ga0138320_13131671	F071832	KNLEKRNALEITDLILDKSIKISEITKEYDWTPAETLKVSNLFKNSNLFYTYIRARLNMLTGKGVKTIKDNATKAIDALVKILQGVIEENIKLENNLIYICFEDLLSFYVLSRFNEQSKEIIEELIDIYKEESNIEGLAKMEKIDKIAEDNFFKGGIVTLFQFKLDLITQNKELNLSTLENVFKHESILRNKFFLLNAELIWAYSCYKFINSTEKDSDYNLCLNCFKIFDIAKNYKIFLLTNKSNFISLINKCIDKLRSLIIILFVNNKIHLNNA
Ga0138320_1320231	Ga0138320_13202311	F043183	LCNHGLVEGLRSATSTSVDRKLHLGDLLVDILHELNDEIDKLALVEGLGVLVGDEETDIISDLLTVVKSLNDRLATKHKEVISTLSEETHETLCKDGIELIELLEANADTNAVNRSLNENTLLLVTCNDNRVAKKLLAHLALDLRLVVTLNNLAAKVGDTHGSSDGAADGVSVWLNSSSHSYNKLQEKRDRNNKKAINQKKNKDDQSL
Ga0138320_1430796	Ga0138320_14307961	F100169	LQNQRYEIPQSEYIWDAPYLEKTQIFPSFKIAPDYPTLQMQKDFTKKYLERSVGPDEYTKKIDATDFIKYDSNNLWKSSYDVMTQHVPKIENPENEKNEISPILAKKQAEAEKKEYYDPLKRYAQRAEDEGSNIERNPLNNHKLIQNSYFPMSRLIGSYWDKVDRCSYFRNKYDNVDFDPEQRESGYTTNLQGNIDFTRMFPGQKGSNKDTEYRLNFWREKGFQWRRLTDENSK*
Ga0138320_1510338	Ga0138320_15103381	F034020	KMNKSRPRTGFRPKSRPSLGSTNNNFYKTNPDFRKTFFIQEKETGEPYFKTTRVGSCRKIVVKNGIPFALTYRIKNPRGEPMNHYKYTLKRQPKNPTTYQEDYCRIKTDCHLGMDNKPLIPYNANHKRSQLPEDLGFKVFRNISKFDIGNEGLINRKQWISTYKDSYQPIKTYYISNPGITSDIEKR
Ga0138320_1655893	Ga0138320_16558931	F033661	QNDFTPICYLINTCDYCITTIGALTSSVQEKIEEKYQNNISYDDIVGKFREIYKKCFDLLSIDLKNSVESQLTTGIVKKNWVLANSSSHDTNSFVNGISKILNDEFNLIKNILQEEFLCHYLNVVPKIISESLITYIYKIKKIDEVGAQEIYSNIGELKNIILNLYYVVVKPVPGQNKENDSRYNCLNMILKKEMSRVENRLKTLGSIVAEFGNAYKNFVEDKSREDF
Ga0138320_1660992	Ga0138320_16609921	F033661	GALTSSVQEKIEEKYQNNISYDDIVGKFREIYKKCFDLLSTDLKNSVESQLQTGIIKKNWVLANSNARDTNAFVVGISKILNDEFNLIKNILQEEFLCHYLNVVPKIISESLIVYLYRIKKIDEVGAQEIYTNIGELKNIILNLYYVVVKPVPGQNKENDSRYNCLNMILKKEMSRVENRLKTLGSIVAEFGNAYKNFVEDKSREDFDKLLQLRGIRKNDIVDYEKIFI*
Ga0138320_1663243	Ga0138320_16632431	F100169	PSFKISPEYPTEQMLKEFSRKYYERSCGFNEYTKPIDPTDFIKYDGHNLWKTSYDVMCEHIPKIEGEEGEFEGSDNALKTDASPRLAKRQAEAEKKVYYDPLKKYATIAETEGSHPERNPLNNHKLIQNSYFPMSRLIGSYWDKVDKVSYFRDRYDKLEFNPEERDSGFSTNLQGHIDFANMFTGQKGSNKDTEYRTNFWKKKGFQWRRLTEEPQKNN*
Ga0138320_1687916	Ga0138320_16879161	F004661	RTGELVIEAKERPENLAQHTGELEIESKDRPENILEQRDAIEILGMEKDELQLQPINTLFIAGIPKPENFVQKAGELVVEGMERPENIVQNTGEIVLEAKERAENILEQRDAIEILGMEKDELQLQPINTLFIAGIPKPENFVQRTGELVIEAKERPENLAQHTGELEIESKD
Ga0138320_1754543	Ga0138320_17545431	F012836	KKKMQITLGEFPERSNYNPTVYKIYERKEYPGTFLELDKLRFMTDYDQTKYLSEEDLKDDALLTLLPLIIAPKHRLKNLYTNYTTIFNTSDSTYSKKGVNKNETKFYSDFYLTNPNKHMDYIELVFDRMAYKFRPFEKKEDGKYRPQIRFGNDEKYLYKYWIVGIDVIGVDRFDLNFEDNTVKLYSKPSYDITKSKPQLLRDVFIYMTIVCVMLCFMFLVFCQKKRAKDIKPG
Ga0138320_1774368	Ga0138320_17743681	F014928	VHREIQPVIHENIQQIITKEIQPIINQKIQPVIHREIQPVIHENIQQIITKEIQPIINQKIQPIIHREIQPIIHKEIQPIITTQVQQVINKKIQPVIHREIQPIVHKEIQPVITTEVQQVINQKIQPVIHKEIQPIIHKEVQPIVTTQIQPIINKKIQPVIHKVVQPIIH
Ga0138320_1832065	Ga0138320_18320651	F088021	PDPKVIHSFLKEGTIFILGGDIWGYDIELFNYYNEKESINKYQNLFTYYESNPPTLSEALIQMFVSCKLNKNQVENLTKDILDKCKRKIDPEFNKIKKNYEKIKKEDAYIICSYTCEAKERNYSPYRILNQKLVSDDRRNDLTNISKYLYILLKALRKLPRYYPKNKYLYRSLSIKVNLTIDPYNEKLKPYIKGNIKTFWGFTSALPDPKVIHSFLKEGTIFILGGDIWGYDIEL