3300010871: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300010871
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0068071 | Gp0125764 | Ga0136263
• Sample Name: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 497811107
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → needleleaf forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: New Mexico, USA
• Coordinates
  • Lat. (^o): 35.8911
  • Long. (^o): -106.2978
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000074	Metagenome / Metatranscriptome	2624	Y
F001429	Metagenome / Metatranscriptome	696	Y
F015564	Metagenome / Metatranscriptome	253	Y
F020480	Metagenome / Metatranscriptome	223	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136263_10216294	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	543
Ga0136263_10481869	Not Available	690
Ga0136263_11153164	Not Available	669

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136263_10216294	Ga0136263_102162941	F015564	AAKGHSHVSTSSQAVQGHGHGHGSHAQPWEGVNLWRTPYKGDTDTITQVKRSKGTLDQYVENRTRRIQQLQLFALRNKSIPTWIMMPRDKLIFAAQGVIVGYVLYQVVTTVYQHLKSKDRLKLIKLLYKDNVD*
Ga0136263_10481869	Ga0136263_104818691	F020480	TSILRSVIVGCLQVFILTLFVVSLFQPWYTEIVDGSATGIASCRWQRDRYWEMDTLECYDCSLCSSGTTWWQTDCEKDHCVHQASVYNATRVCVGISVCLLCIAFITFCGNACFSVPSWVSTAFTGTTLLLSLCIIIAFAVAHPISIRSDREDSGDTTCSNGPCSSFIGDSNFTSLFKLLQGNWRWGASVGYFLYLTGTILLFVTLLVMLSTRYWKRASYPKI*
Ga0136263_10659046	Ga0136263_106590461	F000074	RSLLLLAVIFYLCWGHGTIVNPAMRFNPNVNGGWCSWCQGNQVGCSDKVFCDPPTPCYDAPGPLTIAVKYFSSFGNLKDSNGNFWVDQTNGSDVEPVWCPSQTIDYSFYNNADHNGIYQFQLMPGKPGDEKESLFKSFTQWKSINNDPDTTYYKEDGVTPYKAGICANGSAWTPETAHCRDNAFWKSSFQLPSNLTPGNYIFRWIWYGAMTLDLKRVNGPEPSLFVNCKDIIIGTPQQCNKLV*
Ga0136263_11153164	Ga0136263_111531641	F001429	RIYSNDSHREFWLDKIVLCSYDLLPKNIRFHLESDSEISFKDVELKDTQTHLVIVLNRLLTELKDVEFYYKKKTFPELEDSGRVTFRVIGNGAKLRLTYNVVQGPEDKTPRINEGRAYFDISDLEIEFDKKSLKHEVLVPMLGQMFKLQIKQQIEDQVEKNLTEWMNKLGDMIADSISQTNRPFVSGFDAARKIFKSSDMGKIYKQRKEKLE*