Sample 3300010393

Overview

Basic Information
IMG/M Taxon OID	3300010393 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0138765 \| Ga0116196
Sample Name	Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 0.5m metaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	216124024
Sequencing Scaffolds	12
Novel Protein Genes	13
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	4
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Oklahoma, Zodletone Spring
Coordinates	Lat. (^o)	34.9956	Long. (^o)	-98.6889	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F017852	Metagenome / Metatranscriptome	238	Y
F020727	Metagenome / Metatranscriptome	222	Y
F025653	Metagenome / Metatranscriptome	200	Y
F037787	Metagenome	167	Y
F043801	Metagenome / Metatranscriptome	155	Y
F047154	Metagenome	150	Y
F054137	Metagenome	140	Y
F070129	Metagenome	123	N
F071370	Metagenome	122	Y
F091056	Metagenome / Metatranscriptome	108	Y
F092080	Metagenome	107	Y

Family

Category

Number of Sequences

3D Structure?

F017852

Metagenome / Metatranscriptome

238

F020727

Metagenome / Metatranscriptome

222

F025653

Metagenome / Metatranscriptome

200

F037787

Metagenome

167

F043801

Metagenome / Metatranscriptome

155

F047154

Metagenome

150

F054137

Metagenome

140

F070129

Metagenome

123

F071370

Metagenome

122

F091056

Metagenome / Metatranscriptome

108

F092080

Metagenome

107

Scaffold	Taxonomy	Length	IMG/M Link
Ga0116196_1003674	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	2117	Open in IMG/M
Ga0116196_1005825	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1759	Open in IMG/M
Ga0116196_1006213	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
Ga0116196_1020045	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1051	Open in IMG/M
Ga0116196_1030453	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	875	Open in IMG/M
Ga0116196_1030552	Not Available	874	Open in IMG/M
Ga0116196_1042847	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b	757	Open in IMG/M
Ga0116196_1052076	Not Available	697	Open in IMG/M
Ga0116196_1054537	Not Available	684	Open in IMG/M
Ga0116196_1067418	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	625	Open in IMG/M
Ga0116196_1072876	Not Available	605	Open in IMG/M
Ga0116196_1079579	All Organisms → cellular organisms → Archaea	583	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0116196_1003674

All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.

2117

Open in IMG/M

Ga0116196_1005825

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1759

Open in IMG/M

Ga0116196_1006213

All Organisms → cellular organisms → Bacteria

1715

Open in IMG/M

Ga0116196_1020045

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

1051

Open in IMG/M

Ga0116196_1030453

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

875

Open in IMG/M

Ga0116196_1030552

Not Available

874

Open in IMG/M

Ga0116196_1042847

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_46_16b

757

Open in IMG/M

Ga0116196_1052076

Not Available

697

Open in IMG/M

Ga0116196_1054537

Not Available

684

Open in IMG/M

Ga0116196_1067418

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

625

Open in IMG/M

Ga0116196_1072876

Not Available

605

Open in IMG/M

Ga0116196_1079579

All Organisms → cellular organisms → Archaea

583

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0116196_1000689	Ga0116196_10006893	F091056	MRMFIIVLAAAALLAIPVAASANGSAVDQFSAVKYIRNLSDLACQYRDHGLSLQLDGYNYEWLIFQDSCIRDNIEAELIILGRSREHIIDPLAWQLHVDMLGATIEQINTISDELLTYNFYPNQDRIVQKIQRKANEGSGVLGDIEDELGRGEERNYADLATYGETLWLIGNDLICLVKDLDFENWTALYSGDLCAGDCGQNSFEVQTACWECGSESCNGCPEVGCATVQGKECETKRCAPTNKCKGKGCKQNTCGHCR*
Ga0116196_1003674	Ga0116196_10036742	F043801	MTKKLTGICPCGFSFTTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRAEAMEHIKEVE*
Ga0116196_1005825	Ga0116196_10058252	F037787	MKIYSDDPNLPYKTTKLKALYTKSEIDGLFAKWGVKDVYWHWDPEHNDIFVQFKIAEEIDGVLLQVSAKVEAPSIWDHRTRSKAEGVNWDNSMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASKDGAKVLKDILIPRMNQIQQLAALPQKPVEKVIDVE*
Ga0116196_1006213	Ga0116196_10062133	F092080	MQDKRITIRIPFEIWKGLRELQTMGKISSIQQAAVTGMVNLIESLQAGPGQNQREAAKKRVLNILVKEKPLGNWEDVHRERTDADACRS*
Ga0116196_1020045	Ga0116196_10200452	F070129	LLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS*
Ga0116196_1030453	Ga0116196_10304532	F047154	MYMPYECEEARLSAGEIAEIYRNMKARGLSYIFCQACSEEMKPEQARKSATGLILCRPCHMCNDTDATQEEIDQAIDEDFSGYLACFNQS*
Ga0116196_1030552	Ga0116196_10305522	F071370	MEGLSNKAQAALVGVSSGLIAFGTAAAAVPDFIPAEVKVPIAVTAWLAGVIGFSLKEALGGKGA*
Ga0116196_1042847	Ga0116196_10428471	F017852	KRFISLSYTIPVESEIMPTFLIISRHSPENCPMNNEKMKRMTLELPDKLGGLEKKHGIKRVGVWTVIPEHLLVWVYEAPSSEALQKFSMEPEMVKWMAWNTSEIKLAMSLEESIQLLK*
Ga0116196_1052076	Ga0116196_10520761	F070129	MQYSATTEALLQAIKQDVKHRVDEIVDEAEHAAMTLESERHVDQVLEQALALVEQALAEAAHAMAREIHRERAR*
Ga0116196_1054537	Ga0116196_10545372	F020727	VFGLEKSMQKYLVLVKTIPGKGKEFWEDFSKMPDKPREGVMIESSWSLYGYWDFVIFFKADSNENSLHFVGENLRAIRGISDTSTSPMTILKEHIKM*
Ga0116196_1067418	Ga0116196_10674182	F054137	MMYVVRNRYKESLKPADFPKVNKLIDEGIIPAMEKVQGVRSVRAFNALSGEVILLVEIDELAAIDRALVDEEYGRIAAGMFDYMVRVGGEVWYDRRSWAKCYGRDTTTQERP*
Ga0116196_1072876	Ga0116196_10728761	F043801	MAKKLSGVCPCGFSFVTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRDEAMEHIKEVE*
Ga0116196_1079579	Ga0116196_10795791	F025653	PMKYFESKLKTMCLAELKDYRKRLDESIKQKIDQTAPNEQIAPLILYRGIVEHEMTTRMNKMKNQ*

Scaffold ID

Protein ID

Family

Sequence

Ga0116196_1000689

Ga0116196_10006893

F091056

MRMFIIVLAAAALLAIPVAASANGSAVDQFSAVKYIRNLSDLACQYRDHGLSLQLDGYNYEWLIFQDSCIRDNIEAELIILGRSREHIIDPLAWQLHVDMLGATIEQINTISDELLTYNFYPNQDRIVQKIQRKANEGSGVLGDIEDELGRGEERNYADLATYGETLWLIGNDLICLVKDLDFENWTALYSGDLCAGDCGQNSFEVQTACWECGSESCNGCPEVGCATVQGKECETKRCAPTNKCKGKGCKQNTCGHCR*

Ga0116196_1003674

Ga0116196_10036742

F043801

MTKKLTGICPCGFSFTTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRAEAMEHIKEVE*

Ga0116196_1005825

Ga0116196_10058252

F037787

MKIYSDDPNLPYKTTKLKALYTKSEIDGLFAKWGVKDVYWHWDPEHNDIFVQFKIAEEIDGVLLQVSAKVEAPSIWDHRTRSKAEGVNWDNSMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASKDGAKVLKDILIPRMNQIQQLAALPQKPVEKVIDVE*

Ga0116196_1006213

Ga0116196_10062133

F092080

MQDKRITIRIPFEIWKGLRELQTMGKISSIQQAAVTGMVNLIESLQAGPGQNQREAAKKRVLNILVKEKPLGNWEDVHRERTDADACRS*

Ga0116196_1020045

Ga0116196_10200452

F070129

LLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS*

Ga0116196_1030453

Ga0116196_10304532

F047154

MYMPYECEEARLSAGEIAEIYRNMKARGLSYIFCQACSEEMKPEQARKSATGLILCRPCHMCNDTDATQEEIDQAIDEDFSGYLACFNQS*

Ga0116196_1030552

Ga0116196_10305522

F071370

MEGLSNKAQAALVGVSSGLIAFGTAAAAVPDFIPAEVKVPIAVTAWLAGVIGFSLKEALGGKGA*

Ga0116196_1042847

Ga0116196_10428471

F017852

KRFISLSYTIPVESEIMPTFLIISRHSPENCPMNNEKMKRMTLELPDKLGGLEKKHGIKRVGVWTVIPEHLLVWVYEAPSSEALQKFSMEPEMVKWMAWNTSEIKLAMSLEESIQLLK*

Ga0116196_1052076

Ga0116196_10520761

F070129

MQYSATTEALLQAIKQDVKHRVDEIVDEAEHAAMTLESERHVDQVLEQALALVEQALAEAAHAMAREIHRERAR*

Ga0116196_1054537

Ga0116196_10545372

F020727

VFGLEKSMQKYLVLVKTIPGKGKEFWEDFSKMPDKPREGVMIESSWSLYGYWDFVIFFKADSNENSLHFVGENLRAIRGISDTSTSPMTILKEHIKM*

Ga0116196_1067418

Ga0116196_10674182

F054137

MMYVVRNRYKESLKPADFPKVNKLIDEGIIPAMEKVQGVRSVRAFNALSGEVILLVEIDELAAIDRALVDEEYGRIAAGMFDYMVRVGGEVWYDRRSWAKCYGRDTTTQERP*

Ga0116196_1072876

Ga0116196_10728761

F043801

MAKKLSGVCPCGFSFVTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRDEAMEHIKEVE*

Ga0116196_1079579

Ga0116196_10795791

F025653

PMKYFESKLKTMCLAELKDYRKRLDESIKQKIDQTAPNEQIAPLILYRGIVEHEMTTRMNKMKNQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010393: Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 0.5m metaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences