3300010308: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer E metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010308
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0147100 | Ga0136652
• Sample Name: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer E metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 221865887
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	4
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 37.4127
  • Long. (^o): -118.504
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F020112	Metagenome	226	Y
F030981	Metagenome	183	Y
F032324	Metagenome	180	Y
F069685	Metagenome	123	Y
F070159	Metagenome / Metatranscriptome	123	N
F088317	Metagenome / Metatranscriptome	109	Y
F089114	Metagenome / Metatranscriptome	109	Y
F094058	Metagenome / Metatranscriptome	106	N
F102093	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136652_1004395	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4555
Ga0136652_1004770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	4270
Ga0136652_1006853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3264
Ga0136652_1015377	All Organisms → cellular organisms → Archaea	1831
Ga0136652_1018830	All Organisms → cellular organisms → Bacteria → Proteobacteria	1594
Ga0136652_1024697	Not Available	1330
Ga0136652_1027673	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1233
Ga0136652_1028382	Not Available	1212
Ga0136652_1052501	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	816
Ga0136652_1072089	Not Available	669
Ga0136652_1093122	Not Available	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136652_1004395	Ga0136652_10043953	F102093	VPAKENRKIMKHGTSGVIAIPKPYRDYHNLTPGNTVTILYDSLLLIIPKTHENLLHEKAELIDKLLGQTPIEEPK*
Ga0136652_1004770	Ga0136652_10047703	F030981	MGRIKRCDQRCHAAKGTRCECWRNGFFHGSAGAANRAALARDVTELLEQHGFKKGETAYIEPGALEMKEILETETGETAGVH*
Ga0136652_1006853	Ga0136652_10068531	F088317	VKRLTHETDNPKTPPKTKLDHYGELKALPVPPLEESQFVRWIKSDGVMEENPQRYVYDYDLPFRHLDITTKFRSCNTRHLKEVGVFRTACPELFGDAGYKLVDDAYTSFAHSEFKTAQARGQLKNAPNCSIKEIASFICTAYEIQNFPIVIAEATDERVRIQLYKGLPVYCPYDVRRGDYRLCMATAGYERELTKLCNPKYRAYLSRTKAIGDDCCELTIEVDKTAKK*
Ga0136652_1015377	Ga0136652_10153772	F020112	MAKKTTKTRIKGEKEMVSKAFRKCVELAEEMLSRGYRLQIPSTEVERLIKIGIGADKRTVQKYMRMLIEDLAFLKTVTKNPFGIVIYRIDIEAIEQFVNEHLKEKLRQMKLSDIRLKQNSIEKE*
Ga0136652_1018830	Ga0136652_10188303	F094058	MGKLGQIIANLILYGFLVWLLYDALVVEHDPWFAFCVGFVIAVAILVQLMPGLHARALSPGRFPDAESHG*
Ga0136652_1024697	Ga0136652_10246972	F089114	VQESTLVLTYAGMGLAVMMLGLLIFIQGNVMEHPEQQVKLGRRIRTIGTGLFAIGTAYVIGCLAMAMV*
Ga0136652_1027673	Ga0136652_10276732	F069685	MSEEKQTEDVEVLKARIAELEAENEKLKTTMAEATKTLTAYVEKEKEAAIKSILEKSTLSKDELEKLDLSQLRLVQKGIDSVKGTVKNVRSAGATTGEDENRLTVGCLYHKKEQ*
Ga0136652_1028382	Ga0136652_10283822	F006925	LDKLRRLKLAVEVSVLENWGREAELRKKWMHMWENLGKRILRMPRWMQEIVLEDINTAIRNRIAIMEMIQNAKGNR*
Ga0136652_1052501	Ga0136652_10525012	F006925	LAVKVSVLENFGREAELRRKWMRMWERLGVRILKMPKWMQEIVLEDINTAIRNRIAIMEMIQN
Ga0136652_1072089	Ga0136652_10720892	F032324	MRQPYEQNLDLNYRPVLTYEECLKIVKGLEAVRRCHLTNTPIVERAARLMQRNQIHHLPSLNLLIENMAARALKDMNNSSTIPESQKPITLPGIP*
Ga0136652_1093122	Ga0136652_10931222	F070159	MVKKLWRGLQKRIARTIIQYALDQLVISPQVVDEIQKRTRLPHAVVRIIVEIVFDAIVRGLNESLERYDAEE*