3300010283: Orangutan group fecal microbial communities from Wisconsin, USA - O827 metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010283
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147148 | Ga0129312
• Sample Name: Orangutan group fecal microbial communities from Wisconsin, USA - O827 metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 254915007
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.07
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129312_1000207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	60034
Ga0129312_1000246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	53543
Ga0129312_1001129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16921
Ga0129312_1002992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7847
Ga0129312_1003579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6811
Ga0129312_1006595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4313
Ga0129312_1012783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2622
Ga0129312_1024985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1551
Ga0129312_1025728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1515
Ga0129312_1058059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	790
Ga0129312_1063435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	736

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129312_1000207	Ga0129312_100020721	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKRATPEKTEDSRLFGVKIF*
Ga0129312_1000246	Ga0129312_100024615	F047125	MDVVLLLMVLGVMLSGFRAADALDHIRREILRQEGKRRGWWS*
Ga0129312_1001129	Ga0129312_10011295	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGIFFAKRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTWAGSSLPLPLQAIFF*
Ga0129312_1002992	Ga0129312_100299213	F074899	KQWNKQAATSYFLDKKPPQSLTQQGLEGSTTLGKDEVGSSNLPSSSTEKP*
Ga0129312_1003579	Ga0129312_10035799	F026489	MLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF*
Ga0129312_1006595	Ga0129312_10065957	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0129312_1012783	Ga0129312_10127833	F068855	MCPSSSVPTVEAQGPQVRKSLAPQWLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW*
Ga0129312_1024985	Ga0129312_10249854	F026592	AANSILCCLRTASPQGIAALAAQGGVATLTERSEEAFSVKQFSSVDGK*
Ga0129312_1025728	Ga0129312_10257282	F068855	MCPSSSVPTVEVQGPQARKALAPQGLQDEKERENANVQNAGWLHSFDADYHYRSSDLHYHVNVSAALSEGGAAW*
Ga0129312_1058059	Ga0129312_10580592	F029444	LTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKGAQIFGRRFVGPDGLRKRRPF*
Ga0129312_1063435	Ga0129312_10634351	F026489	SDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF*