3300010280: Ring-tailed lemur group fecal microbial communities from Wisconsin, USA - L827 metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010280
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147144 | Ga0129308
• Sample Name: Ring-tailed lemur group fecal microbial communities from Wisconsin, USA - L827 metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 294047809
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes senegalensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Ring-Tailed Lemur Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.07
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061388	Metagenome	132	N
F076064	Metagenome	118	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129308_1014432	All Organisms → Viruses → Predicted Viral	2419
Ga0129308_1016728	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes senegalensis	2107
Ga0129308_1045579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	910

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129308_1014432	Ga0129308_10144323	F099451	VNNGCAPENTLRGFKLAKIMRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLTDEDIIKLHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKE*
Ga0129308_1016728	Ga0129308_10167283	F076064	LKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAAMKGISLFTSEAEKLMHRADYYSARRQIRLCAPDLKRRNEVKRPPKPALKFY*
Ga0129308_1045579	Ga0129308_10455793	F061388	YATQFRATALPRNERGAYYSPRDDSVHLSIHSVAQGDSISTPYSVLFHEYGHMTDYLIARGEGRSRYSAYSDLFQGIGADGKPILRRSSSGGLLGRTAKDELEGHLSRIRSRNPSMTRDQAARRLVSEAMGKYSVRDRSDISDMFEGAGIGIPYPLGSGHGLDYWSARGNGKEIFAEIVSAEAAHPGSLKAIKEYFPKTYQVYQDMVKARKKK*