3300010278: Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022B metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010278
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147147 | Ga0129311
• Sample Name: Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022B metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 257427463
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Coprococcus → Coprococcus catus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Western Lowland Gorilla Individual Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.78
  • Long. (^o): -88.79
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F029589	Metagenome / Metatranscriptome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F059106	Metagenome	134	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F077320	Metagenome	117	N
F090514	Metagenome	108	N
F101192	Metagenome	102	N
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129311_1001115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20125
Ga0129311_1011209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Coprococcus → Coprococcus catus	3055
Ga0129311_1017151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2176
Ga0129311_1018642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2037
Ga0129311_1020572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1882
Ga0129311_1020943	Not Available	1856
Ga0129311_1025355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1607
Ga0129311_1029075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1445
Ga0129311_1051136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	926
Ga0129311_1056790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	853
Ga0129311_1057946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	840
Ga0129311_1066571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	753
Ga0129311_1085804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	617
Ga0129311_1107557	All Organisms → cellular organisms → Bacteria	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129311_1001115	Ga0129311_10011157	F013656	MGKKYKEANKCETETTINVLYSEKVLSIYTNKVDLERRLYKILGEPKKEYIKGRSVLASLWEIPLDDISKINKVILRADIYGM*
Ga0129311_1011209	Ga0129311_10112091	F059106	VWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV*
Ga0129311_1017151	Ga0129311_10171513	F068855	VPTVEAQGPQVRKSLAPQGLQAEKEMENANVQNAGWLHSFDADYHYRGSNLHHHVNVSAALSEGGAVW*
Ga0129311_1018642	Ga0129311_10186424	F032286	MVKWVCQIVTPIRHRALVFDARLFVGNAADNALVTGGTFRFCRLVCLCVKQRNVILNGKRRSLSDSALFHADNHIKQKKFSLFSLVLIFIFDFAALSERRSCPGFSPRRFVPVGTLTLSRSWRLLHWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENA
Ga0129311_1020572	Ga0129311_10205722	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0129311_1020943	Ga0129311_10209432	F029589	MKEYEIVAKIYNACAGSGRPQTFFEEAELENPDDYVRSKHGKEFARFTKETLPTGQLLYRFDNGSVAYSYEFTEL*
Ga0129311_1025355	Ga0129311_10253552	F077320	MKRKGMRRRRKLVLLAVLLIMVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDALPDNAFTAELPEEIDGRLSYIRDYSASGHYQIVWEGVSAAAEAYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNLLMTRAEEPTATPLPEWLADW*
Ga0129311_1029075	Ga0129311_10290753	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDRPKKRRPFSISKSVICSP*
Ga0129311_1051136	Ga0129311_10511362	F090514	MNLRIHALKKASRQRSGVKIAAARFFSILYYPFYAKRSSFFQQNVQPRGNFFAKRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRA
Ga0129311_1056790	Ga0129311_10567902	F074899	MSGRKQWNKQAATSSSLDKKLPKSLVQQGLEGSTAVGKDEVTSSNLVSSSI*
Ga0129311_1057946	Ga0129311_10579462	F101193	MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCVFFRNSMNDAIGWFAAWLLFLLLLFLPQYIYVRFFMPYETLSEDETRKFHELQKN*
Ga0129311_1066571	Ga0129311_10665712	F032286	MVKWVCQIMTPVRHRALVFNTRLFAGNAADDALVTGNTFRFCRLMCLCVKRRNIILNGKRHSLLNSALFRADSHTVQKTISPFSLALILTFDFAALSGRRSCPEDRSRRFVPVGTLTLLRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRS
Ga0129311_1085804	Ga0129311_10858042	F101192	MQTEPNDKEGRNMTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG*
Ga0129311_1107557	Ga0129311_11075572	F026592	NLLAANSILCCLRTASPQGIAALAVQGGVAPLTEQSDETFSVGRFFSADRE*