3300010260: Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm827 metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010260
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147151 | Ga0129315
• Sample Name: Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm827 metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144177029
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Eastern Black-And-White Colobus Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.07
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F056682	Metagenome	137	Y
F068855	Metagenome	124	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129315_1004126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3835
Ga0129315_1007080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2627
Ga0129315_1025642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes	987

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129315_1004126	Ga0129315_10041266	F068855	VPTVEAQGPQVRKSLAPQGLQAEKESENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEEGAAW*
Ga0129315_1007080	Ga0129315_10070805	F056682	MKTQSRAGKAATQSIGQGKMYSASFRAFPSKNRITFPIQELEKIHENQEVL*
Ga0129315_1025642	Ga0129315_10256421	F029444	MGVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQISGCRFVGFDGLKKRRPFSISKRVLAAASETAGRR*