3300010248: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300010248
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111641 | Ga0124947
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94859904
• Sequencing Scaffolds: 14
• Novel Protein Genes: 18
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii → Roseiflexus castenholzii DSM 13941	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F007404	Metagenome / Metatranscriptome	351	Y
F009403	Metagenome / Metatranscriptome	318	Y
F035322	Metagenome / Metatranscriptome	172	Y
F050404	Metagenome / Metatranscriptome	145	Y
F056643	Metagenome / Metatranscriptome	137	N
F057401	Metagenome / Metatranscriptome	136	Y
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F081941	Metagenome / Metatranscriptome	114	N
F082732	Metagenome / Metatranscriptome	113	N
F085749	Metagenome / Metatranscriptome	111	N
F098323	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0124947_1003894	Not Available	586
Ga0124947_1008820	Not Available	685
Ga0124947_1010048	Not Available	1988
Ga0124947_1012841	Not Available	561
Ga0124947_1017165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	649
Ga0124947_1038361	Not Available	637
Ga0124947_1047411	Not Available	505
Ga0124947_1048431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii → Roseiflexus castenholzii DSM 13941	662
Ga0124947_1072689	Not Available	534
Ga0124947_1083766	Not Available	610
Ga0124947_1090835	Not Available	887
Ga0124947_1097035	Not Available	695
Ga0124947_1099809	Not Available	553
Ga0124947_1129413	Not Available	1049

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124947_1003894	Ga0124947_10038941	F057401	YRLARWANHAWGLLEPEHLAEVWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAAGLVVGAEGYKAAPRYWARVARLLIIAEKPSDLEAEGIRDALRAMVGEEPAALEEFDGYFELTGPGILAGPEVFQPTAP*
Ga0124947_1008820	Ga0124947_10088201	F081941	TGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFSDLKDLLNSRLNHQNKVSPTEIISFLLLSTTILIGKTLHLVLVLNIFG*
Ga0124947_1010048	Ga0124947_10100481	F035322	DISKAPNRVYGQYRGYWTNHLTATTMILPLESRRQSLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTRDGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0124947_1012005	Ga0124947_10120051	F085749	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRG
Ga0124947_1012841	Ga0124947_10128411	F004307	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGAPQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0124947_1017165	Ga0124947_10171652	F073601	VGAGCPLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFGLLRFAWRCAIKIMACGSIIRTLPVEKRALAGMGVLLQQG*
Ga0124947_1038361	Ga0124947_10383612	F007404	VAGEGESWMELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEWFE
Ga0124947_1047411	Ga0124947_10474111	F082732	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSAKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLIAANRGPLMLRTNAAELALPVLEQDQTPDVESSALIGGVR
Ga0124947_1048431	Ga0124947_10484311	F073601	MLQAKATCLVIMVLPAKRREGQRMFWVLHFAWRCAIVKIVACGSIIRTLLVEKKALAGMGVLLQQG*
Ga0124947_1072689	Ga0124947_10726891	F073593	LQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVALIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFVTLLINAAINLIVESAFPKIGTSQCPPEQVVRSNIFGDYCINLNINPVIDFAIVVINSLLLPASAIIAVLFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLS
Ga0124947_1083766	Ga0124947_10837661	F098323	FINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCPSGNGTCAAEKLRKNNNLTENAKKCVGLNSNNLNENQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSSWSDQEIVNKCNSTIPANNSSRKLVKLVPDNNGQLKEVLATRINVKEKLLGVARATEDNFYLTVANQLANPFSNQS
Ga0124947_1090835	Ga0124947_10908351	F005302	WTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVMMVTVRTPTLRQYAIAATNPTNLA*
Ga0124947_1090835	Ga0124947_10908352	F004791	MSEPAKIYDVEAIRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSKVAGLTPNVATITLGEYHQFLEASERKIAFPDVAATLLVKAYGDDILNEPYAAAAPLLKRIFDAVGDEG
Ga0124947_1094133	Ga0124947_10941331	F098323	FINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCDSGNGSCVVLKFRKATEDDKERYRQLTENAKKCVGSNSNNLDDRQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKE
Ga0124947_1097035	Ga0124947_10970351	F005302	MAHSGVVQGLYAGNFAVEISTNGTTWTAVSDAIVKIDDVELSRPSGEVYVGGSSDYATVTVGKREPVEITLTFLYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYV
Ga0124947_1097035	Ga0124947_10970352	F056643	GRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0124947_1099809	Ga0124947_10998091	F050404	MNVNVSNLISNLLSLIVTILIILVLFIGSDVTAQTTPDPTTQEIENFFDPTYRKIAECVRKKYTQNNGNKTTIAGFPTSFFSYDTNAIKTRIQECSGLNIIDSDLVTVVSCLDGIELIPGVGWNQVRPDRLRQCMLATKDTLGIHRQAFVDCVIRNRFNSQTKYLDKDISSG
Ga0124947_1129413	Ga0124947_11294133	F009403	VFRITRRGRGRGRAPVLSVVQSGARLEVREGRYGRGALYAYCDVDDTLAAHTLLLTFADMRARCVHIHTDIPVISEQRFFNSFRAGAGPQPDSDPDSDAGPSPRLPDADADSDSGGA*