3300010242: Marine sediment microbial community from turbidite sediment within the South China Sea

Overview

Basic Information

• IMG/M Taxon OID: 3300010242
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121458 | Gp0154500 | Ga0136484
• Sample Name: Marine sediment microbial community from turbidite sediment within the South China Sea
• Sequencing Status: Permanent Draft
• Sequencing Center: Oregon State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47748427
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Interfaces Within Marine Sediments From The South China Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Microbial Communities From Interfaces Within Marine Sediments From The South China Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: South China Sea
• Coordinates
  • Lat. (^o): 12.91889
  • Long. (^o): 115.04722
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020845	Metagenome	221	Y
F074370	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136484_1000080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	2259
Ga0136484_1005045	Not Available	571
Ga0136484_1005873	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136484_1000080	Ga0136484_10000803	F020845	VQTTKNKQEEVGRISISETQELVLSIVDQEKLDIRIWIKTDSYDGPTKRGVRFYLFDDNWPEFKKLMEKMDKVYEV*
Ga0136484_1005045	Ga0136484_10050452	F074370	MADELAKKLAEAKKKMLGAQQPSGKIIILVKGDSLIKSADPKVEVRQLE*
Ga0136484_1005873	Ga0136484_10058732	F074370	MADKMAEKLAEAKKKMFGAQQPSGKIIILVKGDSLIQCKDPKVEVRQLE*