3300010211: Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCR11c

Overview

Basic Information

• IMG/M Taxon OID: 3300010211
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120452 | Gp0154479 | Ga0136461
• Sample Name: Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCR11c
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80979748
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Phototrophic Microbial Communities
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Phototrophic Microbial Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Little Sippewissett Salt Marsh
• Coordinates
  • Lat. (^o): 41.5758508
  • Long. (^o): -70.635807
  • Alt. (m): N/A
  • Depth (m): .15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012659	Metagenome / Metatranscriptome	278	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136461_111363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1430

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136461_111363	Ga0136461_1113632	F012659	MMQKQTDEQLLDVLVEIRNLMRVAAREPVKAALEAALPDEKSRSAYQMFDGSTSIQQVRTACKMSPNAVVALAGRCTSMGLMEVTKENKRIRLFDLNDFALLEAGESSKSGGKE*