Sample 3300010177

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300010177

3300010177: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300010177 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111635 \| Ga0124944
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	44785070
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F015737	Metagenome / Metatranscriptome	252	N
F016404	Metagenome / Metatranscriptome	247	N
F061617	Metagenome / Metatranscriptome	131	N
F065815	Metagenome / Metatranscriptome	127	N
F069792	Metagenome / Metatranscriptome	123	N
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F081941	Metagenome / Metatranscriptome	114	N
F098323	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124944_102053	Not Available	797	Open in IMG/M
Ga0124944_102958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5271	Open in IMG/M
Ga0124944_104174	Not Available	524	Open in IMG/M
Ga0124944_104373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6391	Open in IMG/M
Ga0124944_118184	Not Available	3652	Open in IMG/M
Ga0124944_120454	Not Available	2184	Open in IMG/M
Ga0124944_121163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	3647	Open in IMG/M
Ga0124944_130294	Not Available	685	Open in IMG/M
Ga0124944_133022	Not Available	736	Open in IMG/M
Ga0124944_136923	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1409	Open in IMG/M
Ga0124944_144345	All Organisms → cellular organisms → Bacteria	2710	Open in IMG/M
Ga0124944_154757	Not Available	973	Open in IMG/M
Ga0124944_163198	Not Available	724	Open in IMG/M
Ga0124944_168165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1698	Open in IMG/M
Ga0124944_175123	Not Available	1092	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124944_102053	Ga0124944_1020531	F098323	MLKNKSWILLVIFALFGFINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCPSGNGTCAAEKLRKNNNLTENAKKCVGLNSNNLNENQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVKKPSNWTDQDIVDKCNSTIPANNSSKKLVKLVPDNNGQLKEVLATRINVKEKLL
Ga0124944_102958	Ga0124944_1029586	F073601	QGRLVGAGCPLLGMSLALGRAMLQAKATCLVIMVLPAKRREGQRMFWVLHFAWRCAIVKIVACGSIIRTLLVEKKALAGMGVLLQQG*
Ga0124944_104174	Ga0124944_1041741	F016404	VETDALTEENRNAVLWALLHLALDPDAPAGARVAAARLFLAQFGETNAERDVLVVVDEAAFVET
Ga0124944_104373	Ga0124944_1043737	F015737	MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWTNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNERIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*
Ga0124944_118184	Ga0124944_1181842	F073593	MFLKGLNKIHIHLGKIRFFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPEQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0124944_120454	Ga0124944_1204541	F065815	NKPMQPETNNSNPQANQPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLIGLILGMYWLVSNFVNYLNITFWLK*
Ga0124944_121163	Ga0124944_1211635	F073601	MLQAKATCLVMVLPAVVRESQRVFWLLHFAWRCAIEIMECGNIIHTLPVEKKVLAGKGVLLQQG*
Ga0124944_130294	Ga0124944_1302941	F000642	MQVVSIALALCAVAAALWYMRRREAGAGRLRGWLLLWDELGGWRALSATYGDSGIVADGVTYPASLPVVRVRGELVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVVGVVLPAVFAYATWSQVAALQSLAVQILSLVDE
Ga0124944_133022	Ga0124944_1330221	F081941	SLEILGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVLMLNIFG*
Ga0124944_136923	Ga0124944_1369233	F002970	MTFVRYWSVIAMSYSTVVDIIEMLAGLNVQYNSATVPALRLTSQASWSDAAQLPMRIVPVLGGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0124944_144345	Ga0124944_1443453	F081941	MLRNYLRRLNLTTKIALSSLFSLLVIFVLYIIFNIVLFGILKIEPTNYAANQFFSALEVLIAIVLSLFIVSGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVLYMDLEVNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSTTILI
Ga0124944_154757	Ga0124944_1547571	F069792	MELKQTGSGRYGFFGRQTLAFLILFLLVFSLPSSNFRKSEVLVDPKTVISSNFFLKQVKPETLKNSLPSLQETKISLIFNRQDKRFLFDVSGNPVFNKTIVQAYSKSFIYETPNLDLNLETFRKAQTTKGQKMRQLPLDDLIPRPKNPDPAKTNLLLYPKYNIRAPIIYTTAADFY
Ga0124944_163198	Ga0124944_1631981	F061617	MAKTLNALANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLVICGLLWYLNVFDLQTVVGQPVSHQSEQLTALDLIRQLNWNTTSQANTTDEQTANWQSLNSDKLVLLTAQNGATCALSLQPNPPENIKPIVQNQPQGWWLPSHCAVSELVAVQIVRLNST
Ga0124944_168165	Ga0124944_1681651	F004791	GTMPEPATIYDVDAIRVDRGVLTIRGAAKLLNRELTAPVIARLVRNAIGDQADRFPIGALKVVYESVLPKIFEPDSAIRSRVEALMPNIATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0124944_175123	Ga0124944_1751232	F005302	MAHSGVVQGLYAGNFAVEISTNGTTWTAVSDAIVKIDDVELSRPSGEAYVGGASDYATVTVGKREPVEITLTFLYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYQLGAAPVDLSG*

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