3300010174: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300010174
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111617 | Ga0124930
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8590670
• Sequencing Scaffolds: 5
• Novel Protein Genes: 9
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006938	Metatranscriptome	361	N
F007225	Metagenome / Metatranscriptome	355	Y
F015874	Metatranscriptome	251	N
F021779	Metagenome / Metatranscriptome	217	N
F077351	Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0124930_103124	Not Available	587
Ga0124930_107699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	657
Ga0124930_109589	Not Available	635
Ga0124930_112449	Not Available	732
Ga0124930_120524	Not Available	736

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124930_102810	Ga0124930_1028101	F007225	QPQKGGCVMRKFAAITALLAVATTASFAQFGIYGATALGESTGLGGGFQGGFVNGQEFDLLIRMDVPQGVPRFPRNGGGSLAFNFNPRYIDIKVFDTATGTPITIAQAVADAQVGQIVNLGGYAYPGTTIAGRDLVGAAAFGARKNPDGTIGVRIAFLSTSRAVSNATHAEPFMRTGPEDDDGNRRLPVVIVNWLNIRDDF
Ga0124930_103124	Ga0124930_1031241	F077351	MSNLRPQYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLTEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWS
Ga0124930_107699	Ga0124930_1076991	F021779	FTNRAGTVESTYSDTIAPLSSKGYNTRFGGALSIAARDNIRGLDLGGTSSTPAFVGSAQVTSSQPLICIAKQIYDKDSTAIPTGSPPSEDPKTRQSLGYNGINLSDAKTEIFLPIAWRINNQPTCNFWRYTGLIVQNAGTSNATVTVTAYTTAGAIVNTYNDPAPLTPLTPRGYNTRFGAYSTAVGSALGPNFDGVLRLTSTQPLVAVAESWQNCDSG
Ga0124930_109589	Ga0124930_1095891	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTKQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIT
Ga0124930_112449	Ga0124930_1124491	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRVLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMRKREG
Ga0124930_114550	Ga0124930_1145501	F007225	LAVATTASFAQFGIYGATALGESTGLGDGFQGGFVNGQEFDLLIRMDVPPGVPRFPRNGGGSLAFNFNPRYIDIKVFDGETGDPITIAQAVADARVGEIVNLGRYAFPGTTIRGVTLVGAAAFGARKNADGTIGVRIAFLSTNVLVSNATHAEPFMRTGPEDDDGNRRLPIVIVNWLNIRDDFGVNGTYTVENDGSFVLVYTGTGS
Ga0124930_117540	Ga0124930_1175401	F006938	VRVTAAKADGLSEAVIESDQPLKPMLAVIREGHAVDREAMGLVERVFGKEVRDLARYYTRSGATLDLLYESLMKYDHSDVAWSSLNDDVKRRLQEAMNAAYKVFGVRGLKPKPLNEVAVEPSSPGASWRLYGRSGKRTDFSVYAEGLARAELIFRRAMRRKQPF*
Ga0124930_118828	Ga0124930_1188281	F006938	MLRIRVTIGRQNGLSEAELVSDEPLAPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAETIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEINLIEGA
Ga0124930_120524	Ga0124930_1205242	F015874	IEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSSYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMRKKEGQNDA*