3300010173: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300010173
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111615 | Ga0124928
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6973890
• Sequencing Scaffolds: 5
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005746	Metatranscriptome	391	N
F006183	Metagenome / Metatranscriptome	379	Y
F006938	Metatranscriptome	361	N
F007225	Metagenome / Metatranscriptome	355	Y
F015874	Metatranscriptome	251	N
F039156	Metatranscriptome	164	N
F077351	Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0124928_102223	Not Available	523
Ga0124928_104228	Not Available	707
Ga0124928_105446	Not Available	863
Ga0124928_107331	Not Available	606
Ga0124928_108438	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	706

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124928_102223	Ga0124928_1022231	F039156	VALTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRALREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNE
Ga0124928_104228	Ga0124928_1042281	F005746	AKAVGRWVHASGFDWTKERVGALVQYLLKLRAGENPCRPPWWSSRYLSYAERVATTAPFEKFLQLVQAWRTALTAYGRLKSVPSRRDVEKFEKAVGSARILTVPLASGRVVEVDTEDWRSRFPFRAHFGISPRQVLPEVRIHGEVLPNNPLSLKLTTGKGCYTPTGEELFRDAWWIMQDHVLHPPGTVPAYWPMLPVLPNFRPEPGRGRGHGAVRCRVQPDGKARFYFAPPRWLQ
Ga0124928_105446	Ga0124928_1054462	F015874	MTEELGHRMKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEYGADYIVCATADWPSAEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNLIIGEILSSMRKREGLNGA*
Ga0124928_107331	Ga0124928_1073311	F077351	MEWDRVSRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLTEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDAAPSFVV
Ga0124928_108375	Ga0124928_1083751	F006938	LFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAQTIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEINLIEGAFADAYQEALLC
Ga0124928_108438	Ga0124928_1084381	F006183	LKVPATVGVPEMVMLPPEKVPVTPAGKPENVAPVAPVVLYVIGVIAVFTQTVWLSVPGAEVSMMVLLGRTMMVPVAVTFPQPPVKVTV*
Ga0124928_108438	Ga0124928_1084382	F006183	LKVPATVGVPEMVMLPPEKVPVTPAGKPENVAPVAPVVLYVISVMGVFTQTVWLSVPGAEVSVMVLFGCTMMVPVAVTFPQPPVRVTV*
Ga0124928_110741	Ga0124928_1107412	F007225	MRKFAAITALLAVATTASFAQFGIYGATATGNSTGLGGGFQGGFVNGQEFDLRIRMDVPADAPLSPINGGGSLAFNFNSRYIDIRVFDTVTGQTTTIAQAVANAQVGQIVNLGRYAFPGTTIDGATLVGAAAFGARRNADGTIGVRIAFLSTNPSVVNENHADPFMRTGTRTNRRLPVVIVNWLNIRDDFGMNGTYTVQ