3300010059: Continental margin sediment microbial communities from the Arctic Ocean - SV_M10_0 metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300010059
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120351 | Gp0146718 | Ga0126367
• Sample Name: Continental margin sediment microbial communities from the Arctic Ocean - SV_M10_0 metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1959503
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Continental Margin Sediment Microbial Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment → Continental Margin Sediment Microbial Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → continental margin → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0077
  • Long. (^o): 6.9046
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003497	Metagenome / Metatranscriptome	483	Y
F077370	Metatranscriptome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0126367_11752	Not Available	559
Ga0126367_11765	Not Available	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0126367_11752	Ga0126367_117521	F003497	NSPLPDRHARSKHGSQRIGDAALLLPVTAFIRLRISAPEPIRHFYLLEAFVSERPFARPQRLFSFENHRGEVKAPDLSLRRNSELFFQPVRPSAPTLGGVRHALGDVRRTKPVAVSRAQNSQTSIQPSLPFRTFVPPDRSAQSAAWSEKLTLVPGPFFLRSPKASITF*
Ga0126367_11765	Ga0126367_117651	F077370	INRPANRKRILKNNSQQLAVPKPMSILGETIDRAIDILIDIYAVNSIGTPFYSFSSSTGSPNMSANITDLMILQFTEYSEITRIYGLVKLKKIQLAFTRASNFIGGGSSTIQNTPSLFLQASTIPYTAGSTTLQRAVAQSDNAAEIDLQTFEPKAFNILLPPHVVSNNRASN