3300010022: Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample H3N

Overview

Basic Information

• IMG/M Taxon OID: 3300010022
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120461 | Gp0151271 | Ga0133904
• Sample Name: Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample H3N
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Maryland
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 452584797
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota	1
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Black Band Disease Transitions
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Black Band Disease Transitions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Belize: Carrie Bow Cay Field Station
• Coordinates
  • Lat. (^o): 16.80288
  • Long. (^o): -88.08213
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000221	Metagenome / Metatranscriptome	1543	Y
F001297	Metagenome / Metatranscriptome	728	Y
F003025	Metagenome / Metatranscriptome	512	Y
F003577	Metagenome / Metatranscriptome	478	Y
F009535	Metagenome / Metatranscriptome	316	Y
F018723	Metagenome / Metatranscriptome	233	Y
F025912	Metagenome / Metatranscriptome	199	Y
F028997	Metagenome / Metatranscriptome	189	Y
F036715	Metagenome / Metatranscriptome	169	Y
F038987	Metagenome / Metatranscriptome	164	Y
F051693	Metagenome / Metatranscriptome	143	N
F054573	Metagenome / Metatranscriptome	139	Y
F057103	Metagenome / Metatranscriptome	136	Y
F083686	Metagenome / Metatranscriptome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0133904_1032749	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1269
Ga0133904_1038613	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1207
Ga0133904_1045106	All Organisms → cellular organisms → Eukaryota	1149
Ga0133904_1047839	Not Available	1128
Ga0133904_1061409	Not Available	1039
Ga0133904_1071828	Not Available	983
Ga0133904_1074688	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	969
Ga0133904_1132879	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	772
Ga0133904_1164795	Not Available	701
Ga0133904_1186591	All Organisms → cellular organisms → Eukaryota → Sar	661
Ga0133904_1201772	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	635
Ga0133904_1249723	Not Available	568
Ga0133904_1306354	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0133904_1032749	Ga0133904_10327492	F036715	MPETMEISDAAKSGDGTTQNVGIKVSAAFQCAECRQKFDSEKAKQLHWKFIHDPNRHQED
Ga0133904_1038613	Ga0133904_10386131	F018723	LKDVFPHFCDRKTKLLALQDVAYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQTWVEEHGKNYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKVDTFDKIMKGGESAVAVGIKGDSCSLDEFLTFLQK*
Ga0133904_1045106	Ga0133904_10451062	F025912	MRKTSLAGGKNVLPGTKAEDEKWIVGEFNCSCVGISRCLAAYCKDDTPNACYDDISAEDKAEAKKMGDLMGEKALAILKK*
Ga0133904_1047839	Ga0133904_10478391	F054573	QKFSSLFHSHLRQSGVSLETLGLENISQVSPDRAEDPQNHNARKALPPTLSVLKRSRAIFRPASSKVRVQKVFLCPFHWKPRPSGVSLESPGLENIPLFAGNRAEVSQNHDARKAVSATLSVLKLSGAIFRPISSKVSVQKVLLCPFNCKLRPSEVSLASPGIENIRQLPGNRAEVGQNYDARKAVSATLSVLK*
Ga0133904_1061409	Ga0133904_10614092	F038987	VNISKTKKDIPKSKTPFFFTLKSLSNQQQLFFTS*
Ga0133904_1071828	Ga0133904_10718281	F003577	RYCFSLKVKYGYISAHKLESERSKSFAVSISLQNKAIGT*
Ga0133904_1074688	Ga0133904_10746882	F003025	MHFPDEGAGGKCNKDFWNKWVPRRLKHNGFVLSLWACVWLLGTYPLGRPLSEGWRFMFTVSFFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQNK*
Ga0133904_1132879	Ga0133904_11328791	F083686	VASSCYCFASVGMLLFNKFAVQDFPLECCLVWAQLFFAASCLSLFAFPYIRIGSTRDLLRWCMVVPFYCGMLLTSILALKTAPMSLVIVLRNTSPLGTLVIERFYPEPLRISGFMLASIFLMIFGGLLYVTQLPSENWQGIGWVFLNSAIAVVDRLLQRLLLSKDQCPVDISKTGITLINNLVGLLPVGIAAYAKGEIEQLPLVYGTLNHWDKFYIVMTCFIGLTISYTSIWAQSLISATSFLVMINANKFVIIGI
Ga0133904_1164795	Ga0133904_11647951	F028997	MLANGSLQVKLPTIWGDEKQSRAEAERRGRLEERRSEEKE*
Ga0133904_1186591	Ga0133904_11865911	F009535	LAVFAIRDLLSVVTFVGVPSSARGAGASSIPRSVGVDYLLRNGPKDADPPLINPASAAGPAHEVTFKKRPFGIARYAPGATGTGAVVMEVTPKSRYPGDPQGQAFVAGVQPGWVVKAVNGQDVTGVPFEGIMESLDDEVLDPVAALSLNLKESGTVTNFDSSTTADKSYGAVGESTFEFGGGQKAELPITVTYVEQR*
Ga0133904_1201772	Ga0133904_12017721	F001297	LLRFRFGATEPYKLCPPPYLLNLKTLLQLRLNLFWVDDPGCEAVYVRDIYRMEFEVFQSLGWCLFYLAAVIIFSTHMCLGWQKVVPAPALEIPKKYHSKATHMGYIFTIFIAMVYVSFPLYCHLFTMSSGS
Ga0133904_1249723	Ga0133904_12497231	F057103	VGQKHEKFREFRTPFPPRDIRKNPRSMYARVPQAMAQFVLKIELLSHIMGTTPILEMARAYGLRPRLWLLVRFK
Ga0133904_1264880	Ga0133904_12648802	F000221	MKVIEQYFHVVLFTMLYKVVLTLKFLDETLACDHSNESY*AVLSS
Ga0133904_1306354	Ga0133904_13063542	F051693	LPFVCVRFIVKYIEENIENFNTRLISRGYPEQMVEKTLREVKYKDRKEALKQKSKIAEGTTTLCVGQFHSTVNTKLWKA*