x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy.
OK
Sample 3300009991
3300009991: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_165 metaG
Overview
| Basic Information |
| IMG/M Taxon OID | 3300009991 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0114297 | Gp0127589 | Ga0105042 |
| Sample Name | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_165 metaG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 56005418 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin122 | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Phylloplane → Endophytes → Unclassified → Switchgrass Leaf → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant surface |
| Location Information |
| Location | USA: Austin, Texas |
| Coordinates | Lat. (o) | 30.387 | Long. (o) | -97.7301 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
|
|
| Zoom: |
Powered by OpenStreetMap © |
Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F006253 | Metagenome / Metatranscriptome | 377 | Y |
| F019912 | Metagenome | 227 | N |
| F039700 | Metagenome / Metatranscriptome | 163 | Y |
| F064862 | Metagenome / Metatranscriptome | 128 | Y |
| F103562 | Metagenome / Metatranscriptome | 101 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0105042_108683 | Ga0105042_1086831 | F019912 | MAKKARIELRMDATTLALRAAAILGVMYGFGLFLMPETMFHLSDDPGAPSNPGWVRWAGGFVLGISIGPWVAAEGWMDEQPFITGLAAAFTLSGLALLYSVISGEYAGAAWFIWMPIVILMFLAPALWW |
| Ga0105042_109837 | Ga0105042_1098373 | F039700 | MPLFEVAILEKPTKKEAEEGASEKLVFGPKAVVARDNQSAAIAAVMDGEVPKDIDRSRMEVLVRPFA* |
| Ga0105042_111555 | Ga0105042_1115551 | F103562 | QHVTAYHSGRSDEVLPKEEPVAKEPSKDAFERLAGLFKKGTAHQDYPVSDVFEGPLASTSRAYDVEGIPLEQHVSVYHSGRSDEVLPKEPEVKHAEPEGESFVGKLTGLFKRGTAHQDYPTTEVYEGPLASTSRAYEVDGIPLEQHVTVYHSGRSDEVAPKEEPAPKEPSTDAFARLAGLFKKGTAHQDYPTSEVFEGPLATTSRAYDVEGIPLEQHVSVYHSGRSDEVLPKEAEVKHVEPEREPGESFVDRLTGLFKRGAAHQDYPTSEVYEGPLASTSRAYEVEGIPLEQHVTAYHSGRSDEVLPKEEPVAKEPSKDAFERLAGLFKKGT |
| Ga0105042_122203 | Ga0105042_1222031 | F064862 | MPAIQAEVSVAANSTNTNIVAGSAFEYSRGRQLLSLGVTAAATGTFTTIQSGADVILEESATYIATQFPIVPDQMFYNDIMEMMDRLRVVARNSTAGAIVTRSIALLTPL* |
| Ga0105042_122517 | Ga0105042_1225171 | F006253 | N*CNKCKSSCRDVFLEFLTTNTPDPHHWTLNTCFGAFLPVWVHLEPFRYYTKLEAKRDKLVQLMQKFMP*CLVRIFTTNAPDPHHWTLNSCFCVFHSVCVHLAPFCYNTKLAAKRAKQVQLMKRFVPRCLV*IFRNKLSRSTPLDPKLRFWCVSFCMGAFGTVFLLHKTCCKTSLTGAINAKDRATMSC* |
