3300009974: Switchgrass associated microbial communities from Austin, Texas, USA - LS_119 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300009974
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114297 | Gp0127586 | Ga0105039
• Sample Name: Switchgrass associated microbial communities from Austin, Texas, USA - LS_119 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26347670
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	1
Not Available	6
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Leaf → Endophytes → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000330	Metagenome / Metatranscriptome	1285	Y
F000698	Metagenome / Metatranscriptome	930	Y
F003605	Metagenome / Metatranscriptome	477	Y
F004317	Metagenome / Metatranscriptome	443	Y
F013855	Metagenome / Metatranscriptome	267	Y
F018309	Metagenome / Metatranscriptome	235	Y
F024195	Metagenome / Metatranscriptome	207	Y
F055387	Metagenome / Metatranscriptome	138	Y
F067312	Metagenome / Metatranscriptome	125	Y
F079533	Metagenome / Metatranscriptome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105039_100002	All Organisms → cellular organisms → Bacteria	41984
Ga0105039_100018	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	13352
Ga0105039_109657	Not Available	753
Ga0105039_110952	Not Available	695
Ga0105039_112864	Not Available	631
Ga0105039_114257	Not Available	591
Ga0105039_117362	Not Available	525
Ga0105039_117518	Not Available	522
Ga0105039_118600	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105039_100002	Ga0105039_10000222	F003605	MAVGDQAQAAGYPIVPDTGEEGRVRWGALEINRTRDFLALVKALIPTGKSAYRTAGGISSGTADPSGGNDGDIYFKIIE*
Ga0105039_100018	Ga0105039_10001815	F024195	MGDKVFNVVGAIVTVALVTTIVSRPNSARVIKAMGDAFSGSIRAALGR*
Ga0105039_109657	Ga0105039_1096571	F018309	NEPSWCNKCKISCHDVLLEFFAINALDPHHWTIKTCFGAFVPVWVHLEPFQYYTKLKAKRDKLVQLMQQFVPRCFVRIFCNERSRSTPLDPNLMFWCVSFRLGAFGTVSLLHKTCYKTCQTGAINAKVHATMSC*
Ga0105039_110952	Ga0105039_1109521	F079533	VSTQLVLNKYNTNYEALRLADSTALAFKCWQNFIKAIYYKLMNYH*
Ga0105039_112864	Ga0105039_1128641	F013855	FSPFCIEFRAVTKLSQMHPNTMKCNKR*VWCPMGSIGCVRCENIRRDFVVRTFALIAPVRPILHRVYCRNKMLPNAPKHYETHHNMSLGSDAMDWADLLQRILLQLCGLNFCFNCNSSA*FEPSIVNQRNGPKCTQTQRNKTKQDFRFQWGWISCIRCEKFGNDFVA*TFALIAPVQPISHRVSCSNEMVRNAPKHYETQQKLSLGSNG
Ga0105039_114257	Ga0105039_1142571	F004317	VIALNYTGKVFGALSPYLSPYRDERQINLSYMVLLDMWNMFG*
Ga0105039_117020	Ga0105039_1170201	F067312	AELVQKFVPRSRVLSFRIKHTRFSPLGPKLIFWCVSYYLGTFGTVWLPYKTRCKTGRSGAKVRAMKSCQIFLQRTYPSTPLNPKLMFHSVSYYFGAFGTVRLHYKLSAKWAKLLQKFVPRSRVGIFGNERTRSTPLDSKLMFWCVSYYWDAFGTVWLNYKTQCKMGRSGGKVRATK
Ga0105039_117362	Ga0105039_1173622	F000330	LSLGPNGVDQVSSLRQILPQLRGTNFCTKLARFPLSFVRQPNGPEYTQMGRNAPKRQFRDKWGGSGAFVAKNSDATSWLELLH*
Ga0105039_117518	Ga0105039_1175181	F000698	MVCFRTVWVHSGPFGCLTKLDAKRAEQVQKFVPRSRVGIFRNERTRSTPLDPKLTFWCVRTIWEHLGLFGSLTKLGAKRAELVQKFVSRKRVGIFHKERTRSTPLDPKLMFWCVSYYLVAFGTVWSHYKTRCKTGRTS
Ga0105039_118600	Ga0105039_1186002	F055387	MLDIRAIIAQKPKKKLYSSMAAMGFVHKDVRGRINHAHTIKEVMAIQILSILTNLP*