3300009942: Termite gut microbial communities - laboratory nest. Combined Assembly of 9 SPs

Overview

Basic Information

• IMG/M Taxon OID: 3300009942
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120447 | Gp0151146 | Ga0132217
• Sample Name: Termite gut microbial communities - laboratory nest. Combined Assembly of 9 SPs
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Luxembourg
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 178119209
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Adephaga → Caraboidea → Carabidae → Trechinae → Trechini → Paraphaenops	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Multi-Omic Termite Study
• Type: Host-Associated
• Taxonomy: Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Multi-Omic Termite Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: France
• Coordinates
  • Lat. (^o): 48.913957
  • Long. (^o): 2.485499
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000006	Metagenome	8944	Y
F011048	Metagenome	296	Y
F031291	Metagenome	183	Y
F050745	Metagenome	145	Y
F069311	Metagenome	124	Y
F081489	Metagenome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132217_1001790	Not Available	4570
Ga0132217_1001791	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Adephaga → Caraboidea → Carabidae → Trechinae → Trechini → Paraphaenops	2797
Ga0132217_1027793	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera	706
Ga0132217_1028405	All Organisms → cellular organisms → Eukaryota → Opisthokonta	997
Ga0132217_1120101	Not Available	634
Ga0132217_1208164	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	836

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132217_1001790	Ga0132217_10017902	F069311	MLVITVQTTIPVKEIDDRITAAMFFVASVLWDLKFHFGSVFKIMNLE*
Ga0132217_1001791	Ga0132217_10017914	F069311	MLVMTVHIIKPVREIADRITAAVFFVVSFLLDFRFHFVSVFKIINLE*
Ga0132217_1027793	Ga0132217_10277932	F050745	VEQRKRMFFKWLVLGKGGVDDVRREPADSSDNAVSVAMAQWNVEHRVFAVEQFFLETVIL
Ga0132217_1028405	Ga0132217_10284052	F011048	VPLGSYTATEVLFPLFVAVLEGFCWTTFQLVGYALLDIIQSTKMAPFQVVFEPGE*
Ga0132217_1120101	Ga0132217_11201011	F031291	VLPRLLTGAQKENRVTVSQDLFDRSNVALLSRFGPCGLFLGPKVEILTKRSPISDGRGDRRKFDTGPLHHPTKHVPGRVPELQITLGAVY
Ga0132217_1201529	Ga0132217_12015292	F000006	KMDLQEVGGGRGDWMELAQDRDRWRALVGTVRDFRVP*
Ga0132217_1208164	Ga0132217_12081641	F081489	MNAPISNPADCEVRGVIWFLQAANVRPSEFHRRFVAVYGEHVMNAASVRKWCIMFTNGRTDVHDAEKSGRPSVITDALKQKVNRIIRENRHFTISEVYEQCPEMSRTVVYEIVTEHLQYRKICERWAR