3300009915: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, surface; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009915
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0151164 | Ga0132236
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, surface; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14176414
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	2
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000040	Metagenome / Metatranscriptome	3998	Y
F000103	Metatranscriptome	2242	Y
F000763	Metagenome / Metatranscriptome	901	Y
F000790	Metatranscriptome	890	Y
F001084	Metatranscriptome	782	Y
F001174	Metatranscriptome	756	Y
F002083	Metatranscriptome	595	Y
F002825	Metagenome / Metatranscriptome	527	Y
F005258	Metatranscriptome	406	Y
F005974	Metagenome / Metatranscriptome	384	Y
F007905	Metatranscriptome	342	Y
F036146	Metagenome / Metatranscriptome	170	Y
F039149	Metagenome / Metatranscriptome	164	Y
F046776	Metatranscriptome	150	Y
F067761	Metatranscriptome	125	N
F073587	Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132236_102309	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	712
Ga0132236_102360	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	707
Ga0132236_102473	Not Available	696
Ga0132236_102557	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	688
Ga0132236_103491	All Organisms → cellular organisms → Bacteria	618
Ga0132236_103518	All Organisms → cellular organisms → Eukaryota → Sar	617
Ga0132236_103724	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	605
Ga0132236_103989	All Organisms → cellular organisms → Eukaryota → Sar	591
Ga0132236_104109	All Organisms → cellular organisms → Eukaryota → Sar	584
Ga0132236_104153	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	582
Ga0132236_104364	All Organisms → cellular organisms → Eukaryota → Sar	572
Ga0132236_105123	Not Available	539
Ga0132236_105781	All Organisms → cellular organisms → Eukaryota → Sar	516
Ga0132236_106076	All Organisms → cellular organisms → Eukaryota → Sar	507
Ga0132236_106222	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132236_101689	Ga0132236_1016891	F000103	MLMLFLLSGSASAAVSDSESKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKL
Ga0132236_102309	Ga0132236_1023091	F002083	GLMKAKTKEIDTLTKSIETKIAKIGELGVEVVTMKEDLDDTTKSLADDEAFLRDLEKNCKTKEDEWAIRCKIRAEELLAIADTIKILNDDDALDLFKKTLPSAASFLQMDSSSTIRANALAAIRTAQKSSKFDRHHLDFIALAIQGKKIGFEKVITMIDEMVTTLKTEQVDDDNKKEYCGKELDTADDKKKSLEHSISDLETAIADTKEAIATLKDEIDALETSIKALDKSVAEATE
Ga0132236_102360	Ga0132236_1023601	F046776	LGQTQKQLSEDQKFLRNLGKTCAEADANFEARKKSRLAEIQAVSETIGILTGDEARDAMDTTFSLLQTSSKSDKLRKDAAAVLRKTHSPALSMLASSVELDAFTKVKAMIDKMIKTLKTQQADEVKKNDWCISELQENEMATMKTKDLKADLEAKIGQLESTIKTLSEEIEKAHLDISNLEVALQRASENRKQENLDFQRVVADQMVTAEILNKALDKLATFYDEAAFAQTKKHT
Ga0132236_102473	Ga0132236_1024731	F000763	MNIKNPIILTLGAFLAAWAGSNFDLDYRTVLFAVVAGVFGYATPKK
Ga0132236_102557	Ga0132236_1025571	F073587	VMSQDIEKKLAYMSTQTRGGEGDRPVIGIDTISHELDAAKYDLGELKDMLNSCKGDTAHVKRIVLACERDMEDFTAAMDAVNVDLDEMRARVDSTHSIITSRQRVEATVTAEISTMRLDMGDMQEALKAHDAWMEDVSQSLQEAHERCHQLSEDLAETRDQTQAKLDTKVDVVSWNDMNDDIDASIKTVRDMASALRLEVDSRRRLVDEGMKNVREELRQCDEKHDANH
Ga0132236_103491	Ga0132236_1034912	F039149	MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTNQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSSANVIIPSPDFHKDIRSDITDGIKVPAGAYVYRASLRVDGG
Ga0132236_103518	Ga0132236_1035181	F001084	DKKKGLEWDISDLEKAIADETETIATLKSEIEALADGIKKLDAAVAEATETRKEEHEDYVSTLAANTAAKDLLEFAKNRLNKFYNPKLYKPPPKRELSEEDRIVVNMGGTLAPTAAPGGIAGTGIALSQAAAAPPPPPEANLAYKKSGGASNGVIAMVDLLIADLDKDSQIAEVEEKDAQKEYEEFMADSAEKRALDSKAIGDKE
Ga0132236_103724	Ga0132236_1037241	F007905	VVRVAERVGEQFGRFQDHECQQIKAGLMAKEEAGTGRVRLSDFWKDAHDNPDGAWQFGESLNYLRQLGVLDESDSRNPRVMIANYISSPSNCIASSSFYSVCCMDECEALIGHLEKEIAASEAGVERIASVVSNLPSSSVAAPRILSETLLNRLEEIAAVHSGAVQLHGRLFAQWMHHAYPRECPYPHISGTTNPQTPDEW
Ga0132236_103989	Ga0132236_1039891	F005258	LQLAQKRQEDDVVAFLSGTQGENYSPASGQIVGILKTMQDEMEADFAEEKAAEEAAIKAFDELMSAKTKEVNALTKAIEEKMQRAGELAVEIVEMKNDLGDTGAALLDDKKFLADLEKNCKTKADEWEVIVKTRNEELLALADTVKILNDDDALELFKKTLPSTSFMQVEVSSTTLRANALALIRSAQSSAKFDRHH
Ga0132236_104109	Ga0132236_1041091	F001084	SDPRLDFIEMAMHGGKIGFDKIIKMIDGLVADLKKEQDTDDEKKTYCLAELDKSEDKHKGLDLDISDLNKAIADEEESIATLKSEIEALEDGISKLDKAVSEATSTRKAEHDDYVATLAANTAAKDLLEFAKNRLNKFYNPKLYKPSPKRELSEEDRIVVNMGGTLAPTAAPGGIAGTGIGLSQVAPPPPPEAN
Ga0132236_104153	Ga0132236_1041532	F036146	MTPCRTWKITTSEGKTIALGAISPKQAEHFMLAMRPDIRIALIEEIKPL
Ga0132236_104258	Ga0132236_1042581	F000040	ESKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYIADAALLTKEIAELDEDITVWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEML
Ga0132236_104364	Ga0132236_1043641	F000790	SEAKAAEAAAVKTFDELVAAKTKEINSLTTGIETKTSRIGDLAVEIVQMKNDLTDTQAAMLEDKDFLADLEKNCATKSSEWETIVSTRNEELLALAETIKVLNDDDALELFKKTLPGSSASFVQMKTSSATSRERVLAAIRKAQQSSKVVRPQYDFIALAIQGKQMGFEKVIKMIDDMKATLKKEQLDDN
Ga0132236_105040	Ga0132236_1050401	F067761	LDQKVYEKNFQSLEDNVTKLTRGTVKLCQVIGVFPGARMNDGTDEELDVDVELLNWEDCAQNLVGRVEKTWRQLSSQKYKSVLDLVSKKADHSVLRLLQISQHHIESQLDRVRNERELWKEVVDKRAQQPLQLALTLKDPHTGQPLQGPGNFMPGFGALPNGPQMHQQRQMLDSASSVTR
Ga0132236_105123	Ga0132236_1051231	F002825	RSRKMTPSLAEVTSMVLEGHSRLRKQPKGYAGVDGARKLLNDMIFEAMTKYDEEIAKCTEYYSKQCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKMNSRLKIVMGDIAVMTMILEMTDCDKSLLQTQHISLLHCQDPCTKKSFVTFDHKG
Ga0132236_105781	Ga0132236_1057811	F001174	MKSVLFVVACFATTVVVDADQSNPLGKVYELMSALEAKIIKEGEAEAKAFKEFFEWCDDASKNINYDIETGKKSQEKLTAKIAELSSDIEVGTSKIEELAGAIATNEGELKDAQAIRDKEAADFAVSEKELVDTVDTLDRAISIISTEMSKNP
Ga0132236_106076	Ga0132236_1060761	F001084	GFDKITKMIDELMATLKGEQDDDDSKKEYCLAEFDKTEDTKKGLEWDISDIKKAISDGKEAVEQLSSEIEALIAGIKSLDKAVAEATKIRKEEHDEYVSTLAANSAAKELLGFAKNRLNKFYNPKLYKAPPKRELSEEDSIVVSMGGTLAPTTVGGIAGTGISAAQVA
Ga0132236_106222	Ga0132236_1062222	F005974	VRFSLDEFLRGNPLERAQVYEILNRIGAMSVEEIRKEEDLLK*