3300009909: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, 3m depth; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009909
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0151156 | Ga0132222
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, 3m depth; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11702638
• Sequencing Scaffolds: 14
• Novel Protein Genes: 27
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1
All Organisms → cellular organisms → Eukaryota → Sar	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000007	Metagenome / Metatranscriptome	8691	Y
F000040	Metagenome / Metatranscriptome	3998	Y
F000059	Metagenome / Metatranscriptome	3008	Y
F000077	Metagenome / Metatranscriptome	2584	Y
F000081	Metatranscriptome	2481	Y
F000100	Metagenome / Metatranscriptome	2281	Y
F000110	Metatranscriptome	2196	Y
F000244	Metatranscriptome	1468	Y
F000844	Metatranscriptome	863	Y
F001154	Metatranscriptome	763	Y
F001174	Metatranscriptome	756	Y
F001374	Metatranscriptome	711	Y
F001425	Metatranscriptome	697	Y
F002083	Metatranscriptome	595	Y
F002650	Metatranscriptome	539	Y
F002825	Metagenome / Metatranscriptome	527	Y
F003107	Metagenome / Metatranscriptome	506	Y
F004442	Metatranscriptome	437	Y
F005258	Metatranscriptome	406	Y
F005382	Metagenome / Metatranscriptome	402	Y
F009308	Metatranscriptome	319	Y
F014818	Metatranscriptome	259	Y
F036488	Metagenome / Metatranscriptome	170	Y
F104104	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132222_1000005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	3813
Ga0132222_1000691	All Organisms → cellular organisms → Eukaryota → Sar	874
Ga0132222_1001016	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii	775
Ga0132222_1001449	Not Available	690
Ga0132222_1001642	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	665
Ga0132222_1001912	All Organisms → cellular organisms → Eukaryota → Sar	633
Ga0132222_1002123	All Organisms → cellular organisms → Eukaryota → Sar	613
Ga0132222_1002596	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	577
Ga0132222_1002869	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	562
Ga0132222_1003014	All Organisms → cellular organisms → Eukaryota → Sar	554
Ga0132222_1003174	Not Available	546
Ga0132222_1003314	All Organisms → cellular organisms → Eukaryota → Sar	539
Ga0132222_1003483	All Organisms → cellular organisms → Eukaryota → Sar	532
Ga0132222_1004285	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132222_1000005	Ga0132222_100000513	F036488	YENCDGFRVFNELIYDGENLYLEEDSTGKGSSFYVMAGDAV*
Ga0132222_1000691	Ga0132222_10006911	F009308	SATDTNPLSKVLDLMAELTAKITKEGEEEAKAFHDYLEWCDEAAANLHYEIKTGAKNKEDLEASIGKATADISASDTKIEELSASISADETELKEATAVREKEVATFEASEQELVDAIDTLDRAVGILQKEMSKNPAVLAQVDTKNVDSIVKTLGAVINAASFTAQDQKKLAALVQSQQNTESDDDDFGAPAAAVYKTHSTSIFDVLEDLKEKAEGQLAELRKAESATKHNYNMLKQSLTDQIEADGKDMSDEKTLKASTEESKAIAEGDLAETVKGLAEDKKSLETASTT
Ga0132222_1001016	Ga0132222_10010161	F014818	LDDFRKTKSDVDADEVKRVAEYDALMQKEHDLIKAKTLALNEAKKNREQKIEDIGTASQELTIVSATLLDDMEYLDELNTLCSEKAQTWDQRTKLRANELTAITQATGIIKATVSEKTQASTIRFSQTGTVVHLADAVASSDNAMEAIEAEAEISEDSPLGFLQRRSIHKHANDPSDGGRKMIIALLKGKGQELKSTLLTSLASRIADDPFAKVKKLIQELIERLLTEA
Ga0132222_1001449	Ga0132222_10014491	F002825	RSRTMTPSLAEVTSLVLDGHSHLRKQPKGYAGVDGARKLLNDMIFEAMTKYDEEIAKCTEYYSKQCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKMNSRLKIVMGDIAVMTMILEMTDCDKSLLQTQHISLLHCQDPCTKKSFVTFDHKGLQEQLSHLKSTFATDLLKNTFNDLFEGIESIEATEFLQTGSEQMPIVNKT
Ga0132222_1001642	Ga0132222_10016421	F104104	VMCSDFSLKSLIFEWSENELGPNPFLKVGRCDHQFSLEFDPSDLQNEEVPQQLQVVGELCSDKGKAIVSAMGDTIVYTVNPKRKQTDLYDLKVLTVVTDFSGDISQISDDMKCVVGEGDKQKRGAAGHVTLTYAEGGQLVTSMGHWIELTRIDASLESVMRAAAHNFGGLEADEFHRVYMEQATDAARHEWIQTTCHRYVTQSAPSRMKARTKY*
Ga0132222_1001912	Ga0132222_10019121	F002650	WLKPQPCRQHCCKLFAHITILTAMQFFRGLVFAALVCGASAASFRTAPDVSAQVARETQENIQIHDVFQSQEAKDDQTVAEVHSNHDLSQIQFRGGNWVVALDRDLKTKMLVEVFPRTALLEGIKDPCAEISCGSLTCPAGFSSTKVDGHCCPYCVNPDVKVESAITGATGSNGGTASTFCPKVWCFPTMCTKAVTAPTTTNGLCCDSCP
Ga0132222_1002010	Ga0132222_10020101	F000110	TKIAQDKAASAKLKEEVATLQSELASMAKAKSEADKLRSEEKAAYDTNSAEMKQGIEGVKMALKVLKEYYAKDDKAHEAADGAASGIIGLLEVCESDFTKGLTEMTAQEESAAADYSAYVKEDEIATTKKQQDVKYKTQEAAGLDKSVSELSTDLETVTDELSAVQRLTVDTLQTQMDTCFNELVAHFNSLSNLNQNEENGNIEIKL
Ga0132222_1002123	Ga0132222_10021231	F001374	TALREKEASAFATESGDYKTNIAAMKKAVAAISKGMGGAFLQTRSASIVKQLSISLDISAVDRDMLTSFLTQSDGYAPASGQIVGILKQMTDTMEKDLADATAAEEAALKEFDGLMKAKTKEIDTLTKSIETKIAKIGELGVEVVTMKEDLDDTTKSLADDEAFLRDLEKNCKTKEDEWAIRCKIRAEELLAIADTIKILNDD
Ga0132222_1002178	Ga0132222_10021781	F000040	VIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEILKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVSALKDLHLIPAEAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIEERGERREERGE
Ga0132222_1002240	Ga0132222_10022401	F000100	HKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTSTRDADVKYLADLTATCEQKASDFESRQQLRAEEIVAIEKAIEIISSNAVS
Ga0132222_1002571	Ga0132222_10025711	F000100	YDALHKDYSESIDALQRAIAVLKKQAYDRKQSSFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAYDMLMQDLNAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTTTCDADVKYLADLTATCEQKASDFESRQQLRAEEIVAI
Ga0132222_1002596	Ga0132222_10025961	F004442	LNLVFFGCLIASANANAFLGRLNPQATAILSAQSEHALLAELEGALGSGHRHATEKRLKRLEQMLAPMFGAMVKNEFGQLGPAAAGYMLHRLFVQRHGWFIRALEPANASFAAWNTSTPTSVLEERVPDHVTQLFETRLGKHGLGLRELAILAATLEHLVHNEALQRLNISFQGAGFALDDSLSEEEAIQIL
Ga0132222_1002712	Ga0132222_10027121	F003107	SIVVNMGGTLAPTAAPGGIAGTGIAALVDVSVHDAGKVAPPPPPETAAAFSKKSEESNGVIGMIDLLIGDLTKEMTEATTTEKDAQADYEKAMSDAAEKRALDSRTLADKEKAKAQTTADMEANTEEKAATAKTLFATEEYIHSLHAECDWLMQYYEVRSEARAGEIDSLKNAKAVLSGADFSLLEVQQ
Ga0132222_1002869	Ga0132222_10028692	F005382	MDKTALIKQFIYEAGSSIVSVEFIKADGSVRRLQFNPRDSKEIKGTGTAMKKPSIVRCRDFRIARTAGEGAWRSFDCERVISVKANGQALSF*
Ga0132222_1003014	Ga0132222_10030141	F005258	GATVAIEKGMSGTFLQTKAANILRRIAEKRQEDDLVAFLAQGEGYVPASGQVVGILKTMHDEMTKDFEEEKSAEDAAIKAYEELMAAKTKEVEALTRAIEQKSTRVGELGVQIVTMKNDLTGTEAALVEDQKFLADMEKNCALKTKDWDERSKTRAEELVAIAETIKILNDDDALELFKKTLPS
Ga0132222_1003129	Ga0132222_10031291	F000059	FESRQQLRAEEIVAIEKAIEIISSNAVAGNAEKHLPTLVQSDRSSFALLRADLNAQTQSHAADYLRTRAKELNSRLLSTLAVRVSDDPFKKVKKMIKDLIVRLMEEANEEAEHKGWCDTELSTNEQTRKEKTEAVETLHAEIDQLEASIAKLTEDIAELTKAVAELDAAMAKATKLRVEEKA
Ga0132222_1003174	Ga0132222_10031741	F001425	AEATALREKEAAAFAAYKAEAESNIGAMVKATEAISKGMAGSFLQTSDAQVLKNLVLAQNTLEDFDREELTAFLSNSNSYAPASGSIVGILKQMTDTFTKELEEATTAEEAAIKAYEELMAAKQQEVDALTKAIEEKMVRLGKVQVEIVEMKEDLDDTGKGLIEDKKFLADLKKNCATKA
Ga0132222_1003314	Ga0132222_10033141	F001154	IRATSTMVKVTIGKLEDPWCEIDLTEEDVEDWKKGVDICEEKLKEVLQLPPITIENCHEREDGDLQWDEVTFEEEVTGKYWHAVIMALHRVREDFIKKQRKMKHLDWYLTMKRTSDKRSPKYYV*
Ga0132222_1003483	Ga0132222_10034831	F001174	MIVVDAEQSNPLGKVYELMSALEAKIIKEGEAEAKAFKEFFEWCDDASKNINYDIETGKKSQEKLTAKIAELASDIEVGESKIEELAGAIATNEGELKDAQAIRDKEAADFAISEKELVDTVDTLDRAISIISTEMSKNPAALAQIDT
Ga0132222_1003493	Ga0132222_10034931	F000077	DITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPTEAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAYDMLMQDLNAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTT
Ga0132222_1003515	Ga0132222_10035151	F000040	GMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIDEANERIEVLKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEML
Ga0132222_1003833	Ga0132222_10038331	F000081	LGISGVQKALGVLKDYYGSGAGDFDAFMQQPAKPKLHTKAGGAGGSIIDILEVVESDFTKNLAAEETQESDAVSVYEKTTQDNKLATTMKSQDVKYKTQEYKGLDKSIAELSGDRDTTNTELSAVLEYYAKIKDRCIAKPETYEERKARREAEIEGLKQALEILENETAFMQ
Ga0132222_1003861	Ga0132222_10038611	F000244	SKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYTADAAKLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVS
Ga0132222_1003967	Ga0132222_10039671	F000007	MARMFAFFCILVAAHASVKGPEDELAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH*
Ga0132222_1004190	Ga0132222_10041901	F000077	DIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFAQVSALKNLNLIPEDAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDT
Ga0132222_1004232	Ga0132222_10042321	F002083	RNEELLALADTIKILNDDDALELFKKTLPSSSFMQVKVSSTTLRANALALIRSVQSSAKFDRHHLDFIALAIQGKKIGFDKVIKMIDDMVTTLKTEQTDDDNKKEYCRKELDQADDTKKTLEKSVSDLDATIADTKEAIATLEDDIKALQSSIKSLDAAVAEATEQRK
Ga0132222_1004285	Ga0132222_10042851	F000844	FFIVFALRRIFIMKFIAFSCVLVLAAVSSATAAAVTPIEKVLQMLSDLEAKIIGEGTDAQKIYDEFSEFCEDRSRELGFEIKTGKGEVKELEAEIQHQASTIDSLNAKIEELAAGIAVDEADLKAATEIRAKEQGAFAAEEKELLEVINTLERAIGIIEKEKENEK