3300009863: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, surface; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009863
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0151137 | Ga0132187
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, surface; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15198968
• Sequencing Scaffolds: 19
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Euglenida → Spirocuta → Euglenophyceae → Eutreptiales → Eutreptiella → Eutreptiella gymnastica	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000040	Metagenome / Metatranscriptome	3998	Y
F000081	Metatranscriptome	2481	Y
F000103	Metatranscriptome	2242	Y
F000282	Metagenome / Metatranscriptome	1381	Y
F000326	Metagenome / Metatranscriptome	1295	Y
F000790	Metatranscriptome	890	Y
F003130	Metatranscriptome	505	Y
F003495	Metagenome / Metatranscriptome	483	Y
F004174	Metatranscriptome	449	Y
F004442	Metatranscriptome	437	Y
F004748	Metagenome / Metatranscriptome	425	Y
F004926	Metagenome / Metatranscriptome	418	Y
F007905	Metatranscriptome	342	Y
F008173	Metatranscriptome	337	Y
F009426	Metagenome / Metatranscriptome	318	Y
F010768	Metagenome / Metatranscriptome	299	Y
F012745	Metatranscriptome	277	Y
F013634	Metagenome / Metatranscriptome	269	Y
F022887	Metagenome / Metatranscriptome	212	Y
F025263	Metagenome / Metatranscriptome	202	Y
F039170	Metagenome / Metatranscriptome	164	Y
F039935	Metatranscriptome	162	Y
F102471	Metatranscriptome	101	Y
F104104	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132187_101010	All Organisms → cellular organisms → Bacteria	1198
Ga0132187_101647	All Organisms → cellular organisms → Eukaryota	981
Ga0132187_102810	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	795
Ga0132187_103729	Not Available	705
Ga0132187_103832	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	698
Ga0132187_103976	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	687
Ga0132187_104335	All Organisms → cellular organisms → Eukaryota → Sar	665
Ga0132187_104581	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	648
Ga0132187_104649	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis	645
Ga0132187_104938	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	629
Ga0132187_105127	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Euglenida → Spirocuta → Euglenophyceae → Eutreptiales → Eutreptiella → Eutreptiella gymnastica	619
Ga0132187_105405	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	606
Ga0132187_106225	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	570
Ga0132187_106459	All Organisms → cellular organisms → Eukaryota → Sar	561
Ga0132187_106747	Not Available	551
Ga0132187_106834	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	548
Ga0132187_107499	Not Available	527
Ga0132187_107600	Not Available	524
Ga0132187_108376	All Organisms → cellular organisms → Eukaryota → Sar	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132187_101010	Ga0132187_1010102	F025263	MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTNQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSSANVIIPSPDFHKDIRSDITDGIKVPAGAYVYRASLRVDGGDVISSGVGGGSATPQLTLVPAMNQGLRSDGTVVSGQFGVSVTGSSSRIENGSNASVNIINSNNLSALAAETTWKLFATRNLGGVVASGLTLASGTFDPRAGVGSLKGKDKALAVCEVCWIVPDSAPKRDDLALQPGGVVES
Ga0132187_101647	Ga0132187_1016472	F009426	LKIEKSILTAAEVNKDVKLQLNMAASETSYSIIFFMTTSPCAISAGAARETLFEGKADYCMIVCE*
Ga0132187_102120	Ga0132187_1021201	F000103	MLMLFLLSGSASAAVSDSESKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLK
Ga0132187_102237	Ga0132187_1022371	F000103	LRVVGEVRAMKFASACFVILAFASCSSAAEVTPVQKVIQLLGGMLEKGKKEKHDEQVQFAAYKQFCDDTSIEKKRSIEKATESIDMLKADIAKAIADADLLTKEIAGLDQDISVWNGDMKAATKVREIEKADYDATHKDYSESVDALQRAIAVLKKQAYDRAQKSSLAQVAALKDLSLIPPSAKKIINAFLSTEEDTAELEAAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTTTR
Ga0132187_102810	Ga0132187_1028101	F003130	LFLAMLSNALWQTQAALHGTNNNMLVPFLLVITASTFVVYKHFADEHGGDPIKHFLALVVIQMLPLVFLQMKILSCPDPVSMLSRFGAKTLLMHVCFLALRVCAWPLLEIGLGFCNLLGLVVACVALYWGFNFSFSSLRAHRDVFGLWFLAFAGAFCTEALDFRRQVSLLETTIFTTSNYIELLAFVPAVWMVQKTVKKNDDTYVPGSDSVVQYQAAFFFAFLLSYYVMEDIISAFRVGGAAPLAATGHIVHFLLLLDFACFLLS
Ga0132187_103358	Ga0132187_1033581	F102471	RVKLSDFYKPSLDGHWQFEESVPYLRQLGALDESDPNAMSVIIVNYLHSQTNCVASSGYYSVCCKDECESLMGQLEEQIAAPEATPSAIVGIVENIGSSTVSNARNISLKMLQYLDDIASLHDGVVPLHGRLFAQWMHHAYPRECPYPHKSGTTRQQTGEEWLLESGMESLATEKEMSDFAKNSVSSPVEGVEGTMPWSTEEELLVCREKAIAAPVSLFARVRPVVLFALVGLIAYGLVQNFKAA
Ga0132187_103729	Ga0132187_1037292	F004748	MFLETLKTIRLYERQSKLGTYHTFKRKNTIYVFQCDSCGTTFLRPRAKVDPQRASNDFKHVCNHCDTKKYAQTVSVKMRKIYSLDASSSTSIG
Ga0132187_103832	Ga0132187_1038321	F000790	NYSPASGQIVGILKTMQDEMEADFATEKAAEEAAIKAYDELMAAKTKEVNALTKAIEEKMQRAGELAVEIVEMKNDLGDTGAALLDDKKFLADLEKNCKTKADEWEVIVKTRNEELLALADTIKILNDDDSLELFKKTLPSSSFMQLKVSSTTLRANALALIRSVQSSAKFDRHHLDFIALAIQGKKIGFDKVIKMIDEMVITLKTEQTDDDNKKEYCGKELDQADDSKKSL
Ga0132187_103976	Ga0132187_1039762	F003495	MNENKIQKEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGT*
Ga0132187_104335	Ga0132187_1043351	F010768	GGYNVHPVPPPNSEIKERIRKRYERKRIKIEKLLTLGYTTSGDP*
Ga0132187_104581	Ga0132187_1045811	F039935	LKRQLLKVRAGLLDEIVVKPSKMHSDEAIAERHKYIVATTGKGPIGMLTGKWFNHVDERGLPSHSCEDKWNDWNHSTATHTKEDQKEATALWEEKEARRKRMMQDDPHLDKEAYVNPTQSISNVNDRLRERKVDFQDLKEQFKRELKVEFPNASEERLQAMAQRLLNEKLLADEKMARFPVQHESFRPNLSLTTQDRRYKMYHHPGTYVFSEMEK
Ga0132187_104649	Ga0132187_1046491	F039170	MGGGDIEVQTATVPWGHNSWSESTHGTRYPKGNTAVAIAAWGNVIVFYARNGLNSYFMNGQQRKWHNHGWTTLSTGIKCAKSGAHFNFLIDKGTGYLRIWGNMVGGNNIDIRGHASGHWATGKSLSGAWGDWDGNSGNDQAHVNRLNAAGRLSVLGTPRSYFKNKK
Ga0132187_104938	Ga0132187_1049381	F007905	SDFYGKALNDGKWQFSESVDYLRQLGALDDADPSNPRVIIPNYISGPSNCVASSAYYSVCCMDECEGLLGHLERYIAAPEASPHLIASFISELSSSSVVAPRKLSKTLVSRLEDIGAAHGGNVQLHGRLFAQWMHHAFPRECPYPHLSGTTNPQTPDEWLASTGEEAMATEEDIQEFVDQPHLNETQRLEVDSLPWSPEEELLARPVHT
Ga0132187_105127	Ga0132187_1051271	F004926	TKYSPQDQTTTELLKAKCIPIPCWVFSAKFPIDALKAWAARQIDIFKSAGLQLQQIRIKNPGQGNDWTAEAVWEHVDTILSVFKEKGVDLPVVYIHNHDFNGMASHIGAQLLRTAQENGFRYLVIDAAYRKNGTHNDNTIVTDALTLTDAQKDALAEYGHIQQQIEQVLTRFDSRISQMTPWDSDWAGGTEGSDLRIAKEYDINP
Ga0132187_105405	Ga0132187_1054051	F022887	EILKFNLPKAHLNQSLKMPREHIHNHVLSRKLKKYYTLTLDKNNDGIVNWSDFEAAIENMVPKEDAEKNSRLKILRKRLEQNFQKYFWDLCAVGDANQDGVIDYDEWLDVMNDIVCHVKESKTFPEWYEGLHKALWRSNEFYDERDVQKEEFVNMMLTWEIDEAAAERAFAYLTEDGKKKMDYHLFQEFMKQFYTNEEANHP
Ga0132187_106205	Ga0132187_1062051	F000326	IDTKTQELADTDEKNAQAKEDIEDTKKTLSADEQFLMMLKEKCSMTDAEWEERQKTRQLEMEAVSKALAVLSTDDAHDLFTKTFNPSLLQKEASMQSERRSQASKLLQAVAQKLKNPRLATLAVRVRLDAFTRVKKAIDDMVAQLLREKEDEIKHKDFCVDEFNTNELQTEKKEREKADLIAKIEDLEM
Ga0132187_106225	Ga0132187_1062251	F004174	EYVALCALLHVVVALKRTYDISINYTIASGKLNLAISGITLLSFMTVHLFQYRFGVTHAYAVCPPPYLVNLHLQTILNPGHPINLFWMPDCKFEEATYVRDIYRLEFEIFKSFGWCFFYVASVCVFATHMCLGWQKVVPAPSLDLPKRYHSKAIHVGYVMTAAIAAVYISFPVYAHSWPMKPGNFLLEPA
Ga0132187_106292	Ga0132187_1062921	F000040	KGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEILKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRNQASSLAQVSALKDLNLIPKDAKKAIDIFLETGADEPEGLAVSAPEANAYEFQSSGIIEMLEKLLDKFIDERTT
Ga0132187_106459	Ga0132187_1064591	F012745	DEIAHRDWCIKELDSNNRSTAAAYDKKDSLLSQIADLEKRIEQLTKDIAAAKEAIAHAMDQMKRASETREAANADFQVTVNDQRVMTIILTKALERMKEVYALLQRRGLKPGAPHIQTSGTHTDPGNGPAAFKTYSQNAGGGRVVKMLEEILADCKEVIDQSMDSEQSDQSAYENFMKDSNKIIIK
Ga0132187_106747	Ga0132187_1067471	F013634	MAIQLAPLLGAGLGALTQSKIDKALAGEKVYTKPKTIFGKLIGGISGRTAAADASASVKTAPISDTVVNALQPQSMNLDPNMRQTFPVTGEVSFGGQATQKTWLPFAIIGGIIAVFYFLFGGKRRRRGGRR*
Ga0132187_106834	Ga0132187_1068341	F104104	GRCDHQFSLEFDPSDLQNEEVPQQLQVVGELCSDKGKAIVSAMGDTIVYTVNPKRKQTDLYDLKVLTVVTDFSGDISQISDDMKCVVGEGDKQKRGAAGHVTLTYAEGGQLVTSMGHWIELTRIDASLESVMRAAAHNFGGLEADEFHRVYMEQATDAARHEWIQTTCHRYVTQSAPSRMKA
Ga0132187_107499	Ga0132187_1074991	F004442	AALNFVFFACLVASANANAFLGRLNPQATAMLSAQSEHTLLAELEATLGSGHRHATEKRLKRLEQMLAPMFGAMVKNEFGQLGPAAAGYMLHRVFVQRHGWFIRALEPANGSFAAWNTSTPTAVLEERVPDHIVQMFESRLGQHGLGLRELAILASTLEHMVHVEALQRLNTSYQ
Ga0132187_107600	Ga0132187_1076001	F008173	KDWLVEVEDTGVGGAGRVRIADFYGKALNDGKWQFSETVDYLRQLGALDESDSANPRVIIPNYISGPSNCVASSAYYSVCCIDECESILGQIEQSIAAPEASPSAITQFVSMIPSATMPSNRSLSPWLHHRLEEVAKHHGGLVPLHGRLFAQWLHYAYPRECQFPHISGTINPQ
Ga0132187_108176	Ga0132187_1081761	F000081	ATLAKQQAEMDSIRASEKAAYDKAKAELELGISGVQKALGVLKDYYGSGAGDFDAFMQQPAKPKLHSKASGAGGSIIDILEVVESDFTKNLAAEETQEADAITVYEKTTQDNKLATTMKSQDVKYKTQEYKGLDKSIAELSGDKDTTSTELSAVLEYYAKLKDRCVAKP
Ga0132187_108376	Ga0132187_1083761	F000282	SGRSSTMQFLQVLVLALAPVVVDAAGLKFVKKAKIDINQKVYIENAPVFGDGAGDGALNTCRSFTHAHVANPDAPTVKVCGTGIKLTAFLLNECDKYYEHSKEIGACNTGMPPNTCQTFSPADDPRFGAYQSYKIEQC*