3300009850: Sorghum rhizosphere soil microbial communities in Albany, CA (condition:control)- sample C

Overview

Basic Information

• IMG/M Taxon OID: 3300009850
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118754 | Gp0148682 | Ga0130085
• Sample Name: Sorghum rhizosphere soil microbial communities in Albany, CA (condition:control)- sample C
• Sequencing Status: Permanent Draft
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52783870
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sorghum Rhizosphere Soil Microbial Communities From California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: California,USA
• Coordinates
  • Lat. (^o): 37.887207
  • Long. (^o): -122.304401
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021903	Metagenome / Metatranscriptome	216	Y
F028190	Metagenome / Metatranscriptome	192	Y
F065443	Metagenome / Metatranscriptome	127	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0130085_1015825	Not Available	500
Ga0130085_1050789	Not Available	618
Ga0130085_1099166	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	3781

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130085_1015825	Ga0130085_10158251	F065443	DRLNTYAQASGASLIQVASAAKSHLNNFAAKMKEMSHKLSKHGSMYAPLIHELVQLTQSVDNGDVSQVVDLINQLLNLLNNALADLLAQQAAYESNYQNHVQAANDNLAAYQAQMDFDAGRADEVGSQDVQANAQLDMAEQNLADAQAALENNQSAFDSNEASYAD
Ga0130085_1050789	Ga0130085_10507891	F021903	DLHSSNQILPYAKLVTDSAQGYGPEVVDFYGVPGQLALGFSSTYSAGAAANAYEVWVDRPNSSPNTDSAFTFLYDTNSFIVVYQADVGNGNKQILFDDRTKVPYAYGFYNTDQWNKVPTTATLWHILDISLVHQGFVYNGFPGENNTADTSATPGAKYGYDGQFFEKTKSIPCGHVASRGANPAYCPATLTYPQVKK*
Ga0130085_1099166	Ga0130085_10991662	F028190	MASITVKKADGTTDIVFDNLAASGGDNSPAVWRQDTGAAAGLPVGLRSLFRVSSKWNGPKTARQVTFEFTQPYAVQDSTTTKYSATDRVVFNGVVTLPQAIPAANLNEVVQVLNLLASTLIKSAVQAGYAPS*