3300009843: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, surface; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009843
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0151114 | Ga0132176
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, surface; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14570925
• Sequencing Scaffolds: 19
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	1
All Organisms → cellular organisms → Eukaryota → Sar	5
Not Available	6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gymnodiniales → Kareniaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000040	Metagenome / Metatranscriptome	3998	Y
F000059	Metagenome / Metatranscriptome	3008	Y
F000100	Metagenome / Metatranscriptome	2281	Y
F000282	Metagenome / Metatranscriptome	1381	Y
F000772	Metagenome / Metatranscriptome	896	Y
F000790	Metatranscriptome	890	Y
F001084	Metatranscriptome	782	Y
F001282	Metatranscriptome	731	Y
F001635	Metagenome / Metatranscriptome	659	Y
F002650	Metatranscriptome	539	Y
F002825	Metagenome / Metatranscriptome	527	Y
F003495	Metagenome / Metatranscriptome	483	Y
F007472	Metagenome / Metatranscriptome	350	N
F007905	Metatranscriptome	342	Y
F008064	Metatranscriptome	339	Y
F008943	Metagenome / Metatranscriptome	325	Y
F015066	Metagenome / Metatranscriptome	257	Y
F022611	Metagenome / Metatranscriptome	213	Y
F025263	Metagenome / Metatranscriptome	202	Y
F060572	Metagenome / Metatranscriptome	132	N
F083598	Metagenome / Metatranscriptome	112	Y
F102460	Metatranscriptome	101	Y
F104104	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132176_100213	All Organisms → cellular organisms → Bacteria	1919
Ga0132176_102497	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	803
Ga0132176_102645	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	786
Ga0132176_102688	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	780
Ga0132176_102932	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	754
Ga0132176_103025	All Organisms → cellular organisms → Eukaryota → Sar	745
Ga0132176_103417	Not Available	710
Ga0132176_104276	Not Available	649
Ga0132176_104329	Not Available	644
Ga0132176_104384	All Organisms → cellular organisms → Eukaryota → Sar	641
Ga0132176_104652	All Organisms → cellular organisms → Eukaryota → Sar	625
Ga0132176_104844	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	614
Ga0132176_104886	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	612
Ga0132176_105467	All Organisms → cellular organisms → Eukaryota → Sar	585
Ga0132176_105522	Not Available	584
Ga0132176_105867	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gymnodiniales → Kareniaceae	569
Ga0132176_106384	Not Available	550
Ga0132176_107403	All Organisms → cellular organisms → Eukaryota → Sar	520
Ga0132176_108052	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132176_100213	Ga0132176_1002132	F025263	MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTNQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSSANVIIPSPDFHKDIRSDITDGIKVPAGAYVYRASLRVDGGDVISSGVGGGSATPQLTLVPAMNQGLRSDGTVVSGQFGVSVTGSSSRIENGSNASVNIINSNNLSALAAETTWKLFATRNLGGVVASGLTLASGTFDPRAGVGSLKGKDKALAVCEVCWIVPDSAPKH
Ga0132176_102497	Ga0132176_1024971	F104104	VPADSVVFNFECCSGCGDKAFPSGNDDCFGGLEHWTPTATSSAAMKFLGFALRSGFTVMCSDFSLKSLIFEWSENELGPNPFLKVGRCDHQFSLEFDPSDLQNEEVPQQLQVVGELCSDKGKAIVSAMGDTIVYTVNPKRKQTDLYDLKVLTVVTDFSGDISQISDDMKCAVGEGDKQKRGAAGHVTLTYAEGGQLVTSMGHWIELTRIDASLESVMRAAAHNFGGLEADEFHRVYMEQATDAARHEWIQTTCHRYVTQSAPSRMKA
Ga0132176_102645	Ga0132176_1026451	F001282	MFGMAVGRCFSLMFLTLSATLVCVHANTFLKAKPTSHQERISEEDIQTSLLAEVEGTFGEGSASSRLKQMKDSLAPMYAALPKNENGYLSHSTVRYALHRLFVQRHGWFIKGLHEAGGHRNASADVGILKEQVPAYVQDLFEKRLKGRGFGLHELGVLAATVEHLVHNEAIKRLGDVFKVYDYLPSSPLNEDQVDEVLDMYMTGYILGENLATMTLQEAMDAKDEMPEIFMAWNATKDFVRRVRKNI
Ga0132176_102688	Ga0132176_1026881	F003495	MKENNENKIQKEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGT*
Ga0132176_102932	Ga0132176_1029321	F102460	AQQKAEYAKWETCKKDIDTTEDKIWTANVEKRDLGDKHTDLVNTIKQLTTDIHDLEAQVASDEVSLKQAGEQRKAENQLFQTSIADQRATIDILHMALKRLQEFYSSKSALLEVRLHANTDASVAPPPPKPSGPEAVGYKKSGTSGGVMQLLDMIIADAGRTEDELHASEQKAQEDYAAYVAATTASIEADRVAIAESEKQLSSTESAKSETEEAQQGNQASLDKLNKLLTDLHGQCDYVIKYFSIRQQSR
Ga0132176_103025	Ga0132176_1030251	F001084	ELFKKTLPSSASSSFVQMKVSQGSMRQHALNILKVTHKKQQKSDPRLDFIEMAMHGGKIGFDKIIKMIDGLVADLKKEQDTDDEKKTYCLAELDKSEDKHKGLDLDISDLNKAIADEEESIATLKSEIEALEDGISKLDKAVSEATSTRKAEHDDYVATLAANTAAKDLLEFAKNRLNKFYNPKLYKPPPKRELSEGDRIVVNMGGTLAPTAAPGGIAGTGIGLSQVAPPPPPEANLAYKKSGEESNG
Ga0132176_103417	Ga0132176_1034171	F022611	MWGLPDRQPFNYGPYKLWPCFSNPEFQWFSPIDGKPHYFRTLNEAKLFIKDRLSVEDAENLCD*
Ga0132176_104042	Ga0132176_1040421	F000100	KQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTSTRDADVKYLADLTATCEQKASDFESRQQLRAEEIVAIEKAIEIISSDAVAGNADKHLPTLVQSDRPSFAQLRADLNAQTQSRVADYLRTRAKELN
Ga0132176_104174	Ga0132176_1041741	F000040	IKLLSSPNVAFGLSFVEMKGVPCMLMLFLLSGSASAVASDSESKVTPVQKVVQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPE
Ga0132176_104276	Ga0132176_1042761	F083598	RGWARLMLDRRGLVQAPNAPLDQRQHPRAPDGYDEETAYESYMNPEPGFQSGPGDFVDAD
Ga0132176_104329	Ga0132176_1043291	F007472	IQLGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEFSYTRIAASDSSLASSLYNYTQTTFDMFGQTVNTQVANTKIVKTSQQTYAQLGASSVNQQFKIQQAFVLISLLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVASEIIAFLAFLGITEKISSDSPNCLSGPCQKFADTVTTQLGESTLAIGSESVAVSL
Ga0132176_104384	Ga0132176_1043841	F000282	MQLFGVLVLVLAPGVVDAAGLTFTKKAKLDINQKVYIENSPVLGDGAGDGALNVCRTFQHAHIDNPDAPAVKVCGTGIKLTAFLLNECDKYYEHSKEIGACNTGLPPSTCETFSPANDPRFGHYQSYKIEQC*
Ga0132176_104652	Ga0132176_1046521	F008064	ELEGDLAQTTADRDEDQKYFDDTVALCTQKTTDFESRQELRAGELDAISKAIEIISSQAVAGSGEKYLPTLLQTENKRMQALSQLRSNEMSPAQQRVASFLNEQARKTGSRLLSAMALSAEANPFTKVKKMIKDLIVKLMEEATSETEHKGWCDTELTTNKQTRDKKTAEVNELESEIEDLTATIAELTQDIADLTAAVKELDAAMA
Ga0132176_104844	Ga0132176_1048441	F015066	KIFTPVLGAQATVALTAEGAEFSSTDTAVTFQEDTVVKFAGAGRLDVELVDRSDPSFLDLYIRELAASYAQKTDAYAANIAAQNSAASTGATIYKSIADGIADSFGVMRFTPNRLLVANTGGEDGIDYSGLLGAVDGSGRPLFAAAVPSNAGGLISQGSTAGTVAGLSLVVDPNYTGNNANAKYALVYPSAAMRFHESAQIQLR
Ga0132176_104886	Ga0132176_1048861	F007905	EQRASGSIEFSLVARTAERIGEQFGAFQDHECKHIKASLVAMEEAGTGRVRLSDFWRPALNDPNGSWQFGESLSYLRQLGVLDESDAKNLRVIIPNYVSSPSNCIASSSFYSVCCMDECEGLLGHLETKIAAPEAAPEQIAMLVTDLSSSSVAAPRKLSQVLRQRLDEIAEVHGGSVQLHGRLFAQWMHHAFPRECPYPHKSG
Ga0132176_105467	Ga0132176_1054671	F002650	QPCRQHCCKLFAHITILTAMQFFRGLVFAALVCGASAASFRTAPDVSAQVARETQENIQIHDVFQSQEAKDDQTVAEVHSNHDLSQIQFRGGNWVVALDRDLKTKMLVEVFPRTALLEGIKDPCAEISCGSLTCPAGFSSTKVDGHCCPYCVNPDVKVESAITGATGSNGGTASTFCPKVWCFPTMCTKAVTAPT
Ga0132176_105522	Ga0132176_1055221	F002825	TPSLAEVTSSMLDGHSHLRKQPKGYAGVDGARKLLNDMIFEAMTKYDEEIAKCTEYYSKQCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKMNSRLKIVMGDIAVMTMILEMTDCDKSFLQTQHISLLHCQDPCTKKSFVTFDHKGLQEQLSHLKSTFATDLLKNT
Ga0132176_105672	Ga0132176_1056721	F000023	SWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEAS
Ga0132176_105867	Ga0132176_1058671	F060572	LAVTVAYSFCSTMNSVVYVLFGLLVTASGAREWEVANIARNAKGEISDAELGLLNLKNAMQDPSLLKEMAESLRRPEGRGELVKMMANPKFQEQAKNVADNMRARGISANFLNPASYAKKQDSSKTLQTLLLALNPVAAARGIAAPRSGNAAHMSALDELIELAESTPGPVQYWDPLGLSEMDFWGAGN
Ga0132176_106384	Ga0132176_1063843	F008943	LTIPIFIIVAAAVLTYDAQQERALFQQTYNKNLECRQALKDQTVVRVNEICGDVPQIKDFTGGNRND*
Ga0132176_107370	Ga0132176_1073701	F000772	TAEKILKETSTGAVEQSYSLLQVQSKAASSLQSRADLKNAEVVNMVKKLARVHHSAALAQLASRIASVIRYGNADGEDVFGKVKDLISNMIEKLEVEAKADATEKAYCDEEMSKTEAKKSELEGAISKLTSKIDVSAAKSAELKEEVKTLQAELATLAKQQAEMDSIRADEKA
Ga0132176_107403	Ga0132176_1074031	F000790	DLAVEIVQMKNDLTDTQAAMLEDKDFLADLEKNCATKSSEWETIVSTRNEELLALAETIKVLNDDDALELFKKTLPGSSASFVQMKTSSATSRERVLAAIRKAQQSSKVVRPQYDFIALAIQGKQMGFEKVIKMIDDMKATLKKEQLDDNHKQEYCAMQFDTSDDKKKGLTR
Ga0132176_108039	Ga0132176_1080391	F000059	ATCEQKASDFESRQRLRAEEIVAIEKAIEIISSNAVSGNAEKHLPTLVQSDRSSFAQLRADLNAQTQTRVADYLRTRAKELNSRLLSTLAVRVSDDPFKKVKKMIKDLIVRLMEEANEEAEHKGWCDTELSTNEQTRKEKTEAVETLHAEIDQLEASIAKLTEDIAE
Ga0132176_108052	Ga0132176_1080521	F001635	QILHGRRCPQMTWGRTLENALSSKGISKEFEEWIAIAKDRPKWRQLTHSNAKPLSEA*
Ga0132176_108052	Ga0132176_1080522	F001635	MTWGRTLEKALSSKGISKEFEEWIAFAKDRPKWRQLTH