3300009835: Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample B

Overview

Basic Information

• IMG/M Taxon OID: 3300009835
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118754 | Gp0148681 | Ga0130084
• Sample Name: Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample B
• Sequencing Status: Permanent Draft
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46089914
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sorghum Rhizosphere Soil Microbial Communities From California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: California,USA
• Coordinates
  • Lat. (^o): 37.887207
  • Long. (^o): -122.304401
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000360	Metagenome / Metatranscriptome	1232	Y
F000654	Metagenome / Metatranscriptome	958	Y
F001011	Metagenome / Metatranscriptome	806	Y
F001111	Metagenome / Metatranscriptome	774	Y
F001256	Metagenome / Metatranscriptome	736	Y
F003556	Metagenome / Metatranscriptome	479	Y
F009870	Metagenome / Metatranscriptome	311	N
F018518	Metagenome / Metatranscriptome	234	Y
F020944	Metagenome / Metatranscriptome	221	Y
F022569	Metagenome / Metatranscriptome	213	Y
F035908	Metagenome / Metatranscriptome	171	Y
F083540	Metagenome / Metatranscriptome	112	N
F091155	Metagenome / Metatranscriptome	107	Y
F099083	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0130084_1016000	Not Available	551
Ga0130084_1040135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597
Ga0130084_1052310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	733
Ga0130084_1066261	Not Available	513
Ga0130084_1066626	Not Available	622
Ga0130084_1074314	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	621
Ga0130084_1078301	Not Available	558
Ga0130084_1086636	Not Available	731
Ga0130084_1088507	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa	552
Ga0130084_1097002	Not Available	830
Ga0130084_1100654	Not Available	502
Ga0130084_1101195	Not Available	540
Ga0130084_1105356	Not Available	653
Ga0130084_1106627	Not Available	535
Ga0130084_1121029	Not Available	781
Ga0130084_1121750	Not Available	780

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130084_1016000	Ga0130084_10160001	F018518	MNLPLPLELTEPVALADDLNSQVRAQMCSCTSSYAQCKTVGFLGAVQVDLSDVVVDDVIA
Ga0130084_1040135	Ga0130084_10401352	F035908	MASAVPAWWSNPPAKLRFGLVLRNWHDGAICASREAAVKLGNILKWVLLAFIVWWVIEAPTNAAHLVHNIGTFLSSAATGLSHFVASV*
Ga0130084_1052310	Ga0130084_10523102	F099083	GKGQGATPPPPFPTILGVWSHDERNVLIKGKWHTMILDHGRIVKSAPGQVTLREPDGTMATIPLSVKTRVAPLRFADTPPAFRRGFWAITMRIDDGAAVRLRLMLRP*
Ga0130084_1066261	Ga0130084_10662611	F001111	FGIFDPQFGDWEPKVYIHLARARADSEILSGQILDRVLYFTLLQDPHVYKIDLAVRLYRGNFTTPNNTMLVGNPVTNELYGYSPSNIGIWKFNNFVSGNRTVIAKIDLSGVVPFPSSTINPIDNTMWVCLWGTANDAWLKVDLKKTSNNLAWASTKKTDGLFDFNPYTIT
Ga0130084_1066626	Ga0130084_10666261	F001256	TYLALAQNDNMTQEFGEMKKIMYPVMGMVFGVIWIALAFIGARLPLDIILIVVGLIDALFGIFLIFLPVTTFLGLFYVAVGAFTIAVCRHSWGGDRGIDFLLALTIIIFLLTGGLTFIAYDWGLGSDYVISRISSYTYLSNCDNDMNIYRAPGDGKSTRCHNWAFFTAFCVFLLFLVQPIALIAAAFKRVGRHHDTTVVVNEKHQAE
Ga0130084_1074314	Ga0130084_10743141	F003556	MAGKLLSAAYEHRHIASLRELLLSTAEQLSSTPFLDMRNQAMAYKYTAEELTTMTTSAPTIDPDYLGSFLQSVYGVWEQELVDCYISVCDGILGFQRVNGRSGKNNLHIAPKIPRALWDTKYESIVAVDVSL*
Ga0130084_1078301	Ga0130084_10783011	F000360	FHLESESDLSMKSLESRGHTRLVIRLDKFRTELKNMKFFYKKKTFPELMDNGVVSFRIGGDGARLILVFNVEKKIGDAQPHLTEGYADFHIRQMDIDFDKDTLTHDVLVPMITNLSKQDIQNEIEKVVEKSLTNVIQKLGDQLSQTLSQVNRPFLNGLETAKETLKKSEMAQVYTNRREKLME*
Ga0130084_1086636	Ga0130084_10866361	F022569	YNNKINNKKTKNMSSTIASTNVSVKEVAKEQLEKERERQLSGEQQSFKLREVQDLAQQLRVFLTEGQLPGPEVLSPVLLKAEELLVKITLRVDLEPETRQVIEDIASLVVTAKQMDRNKGIADRLQRIAEESQKAIETMRRSGVPSEAKEASKETLDFINNWRPVFQLLSRSRDFRQLFVDSLRIAKRVLSRQAKPIVDDAKERFIEGQSATTIAQTAKVEIKKRARKKYKFPMRKKTLF
Ga0130084_1088507	Ga0130084_10885071	F091155	KMMKLVLALVCIVAIVAAQTPAKPKWPAKFSASVGVTGWPDHRHHFFRIFWDANQNKDRIDGIVHWQEEPYFATHIFDHTQKKEYAIYYQRETEVCFTRPLNRTMPKPNFNNVKYIGQAIIDYQPVYHWIESDPEKRFTLQYYDTQDTRVPLRIDFDDHRDRRAITQRFWEFDQCNQDPNLFT
Ga0130084_1097002	Ga0130084_10970021	F083540	MLSPKMMFSPRSYRKNLNKHQMLLDEEHHSDLVELQQPAFNFANSIVEKSLDLLEYRVDFKGSAFKDCAYMRDIHDNKILKAKTATWSLDHKFKVTNLQQHDVWGTACCKLGIESCKYLIYFRDIEKAWFRKTMCKNRQYYYEVEFMDFRPNKWTIEAPALHRMVIKRDDGIVATLNRGCFEIHEFLSTEDTFVVQCIVLLFAQAFIDGVCVP*
Ga0130084_1100654	Ga0130084_11006541	F018518	MNLPLPLELTEPVLLVDDLNSQVRAQMCSHTTSYQKCKTFNALGLVQVDVSDVQVDDVIA
Ga0130084_1100654	Ga0130084_11006542	F018518	MSLPLPLELTKPVLLETDLNSEIKAQMCSGTRSSQCSGSLNTLGIVQVDATDVQVDDAIA
Ga0130084_1101195	Ga0130084_11011951	F091155	LLLALVCVLAIVAAQAPPKPKWPQRFSASVSVTGWPDHRHHFFRIFYDSVQNKDRIDGIVHWQEEPYFATHIFDHTQKKEYAIYYQRETEVCFTRPLNRTMPKPNFNNVKYIGQAIIDYQPVYHWIESDPEKRFTLQYYDTQDTRVPLRIDFDDHRDRRAITQRFWEFDQCNQDPNLFT
Ga0130084_1105356	Ga0130084_11053561	F009870	MNKNHDKHNKGVHPAFHMNGHGYPASLKKLVIVLLAIDFFTLLVSILAFAFTIAYMAKEGEIDYGCSNGYYPTDWLSASFGLTIISEITTIVAMILLMIIWLVRKKSMSIIYRFRLNRWLHIFLVFSRIALLIALLGLLKKHEHFWCYRSTGLWVIVFDAITALSIMQVIGILLWFILRFVIRAIYKAWYKPRPTQTTTVPT
Ga0130084_1106627	Ga0130084_11066271	F020944	QGTGYIDKQWGTVNWNQDYDGWYWSTGHYGNYTVDMFVLPTSAAFNHQQTEDTYLAKGNGPSKVLVETMKGVTAHASGGNITAPGGVHTYPKILTLQWKNGTNSATLTLTNPSIITAATPVINTNATMYGYPQYMRLEGKGTLNVQWNGSNETASAPAIWEVSYAH*
Ga0130084_1121029	Ga0130084_11210291	F001011	SDLSFVDSQGKLQVDTDMLSKLQTSFLPVLVDALKYIPVPKIYSNDHEREFWLDNLVLCSYDIMPENLRFYFETSSDVSMRDLEVHSHTYLVIQLNKFLTELKDIEFFYRKKSFPGFEDHGKVNFRIGGQGAKLTFTFAIDQNPEDAIPRIRKGYANFDISDLSIDFDKSTLRHPTMVPLLTQMFKIQIRHEIERRVEQNLTGFLQKLGDMMTRTLTEVNRPFLTGIEMAKKAVKSSQISQVYEKRRELLE*
Ga0130084_1121750	Ga0130084_11217501	F000654	DQLNKVMGDDLTKVMDSIQGVKSRNEKYSFDLGQRGIKPVLDFMDLTKLSENDPNLSFLFQGPLSGLEEFFRGNTFITYKYLKAHALLLELGKLFQVIEKAANCAKQGGTLLVYGVANAQLNALLDSTKSMINAIRDEFTAVCKIAECAFEKLVYENKATVERSKWMGHFQHVFPASNMINESVKEVLHDVADIKATANAMTLYERFQKAQNDTADFLSSAEGFSQRTAAVLGQEYKKPEIKEDDLKKGSIDNTEALFA