3300009833: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 2, 3m depth; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009833
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0149177 | Ga0131968
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 2, 3m depth; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7488291
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000103	Metatranscriptome	2242	Y
F000763	Metagenome / Metatranscriptome	901	Y
F005469	Metatranscriptome	399	Y
F006739	Metagenome / Metatranscriptome	365	Y
F036020	Metagenome / Metatranscriptome	171	Y
F039149	Metagenome / Metatranscriptome	164	Y
F055689	Metagenome / Metatranscriptome	138	N
F085576	Metagenome / Metatranscriptome	111	N
F102471	Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0131968_100232	Not Available	1457
Ga0131968_100599	All Organisms → cellular organisms → Bacteria	1032
Ga0131968_101286	Not Available	761
Ga0131968_101807	Not Available	662
Ga0131968_101881	Not Available	651
Ga0131968_102435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	590
Ga0131968_103523	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131968_100232	Ga0131968_1002321	F055689	MSIARLIYMNKTLMYLPMKEVLECPEIKGMNLPQSFTETLLESCYLYEDMFKRPFNGAEKYYMERLKRHISAIATEVDRQYYKMKRGHLSEVKIRQSLFNEP
Ga0131968_100599	Ga0131968_1005992	F039149	MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTNQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSS
Ga0131968_100935	Ga0131968_1009351	F000103	RFVKMKSVPSMLMLFLLSGSASAVASDSESKVTPVQKVVQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYIADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAYDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTT
Ga0131968_101286	Ga0131968_1012861	F085576	EQGLMKQWYIRLKSGNFENGYFDVGNNLDLIMETAKSEFAKDCIAQGFVPLTSEVVLVEQTDI*
Ga0131968_101807	Ga0131968_1018071	F006739	VETDKYNVLVGYEGRALDRINALETIEQDGDIVTWQDLTTGESRQVSIEQIQFTRMTPPDRGFTGYGGMLTMTVRTV*
Ga0131968_101881	Ga0131968_1018812	F036020	VNNDEIPSWAIELIRQVERLNEKIPTHVDWVERNIKDHEMRIRALERKVWIVAGAAGVIASVVTFFAQVLRG*
Ga0131968_102046	Ga0131968_1020461	F102471	GRVKLSDFYRPSLDGGWQFQESVPYLRQLGALDESDSNSMSVIMVNYLHSQTNCIASSGYYSVCCKDECESFMGQLEEQIAAPEATPSAIVGIVENIGSSTVSNARNISLKMLQYLDDIASLHDGVVPLHGRLFAQWMHHAYPRECPYPHKSGTTRQQTGEEWLLETGVESLATNEEMFQFMKNASAAPKVTEDKEFMPWSTDEELLMHR
Ga0131968_102435	Ga0131968_1024352	F000763	MNIKNPIILTLGAFLAAWAGSNFDLDYRTVLFAVVAGVFGYATPKK*
Ga0131968_103523	Ga0131968_1035231	F005469	YEALKAAKEDEIATGRKMIVSIDAQIADLQEQYAEQFKQLEDTQDQLALDEEFLKNLKEKCATMDADFDKRTKDRLAEIDAVTDTIKILNDDESFEMFDKMQAPTPPEFLQTDASTSEKERRLKAVSALQRAAQLSANPAIALIAASAQLDAFTKVKAMIDKMVAELHT