3300009829: Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample D

Overview

Basic Information

• IMG/M Taxon OID: 3300009829
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118754 | Gp0148683 | Ga0130086
• Sample Name: Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample D
• Sequencing Status: Permanent Draft
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44777288
• Sequencing Scaffolds: 19
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sorghum Rhizosphere Soil Microbial Communities From California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: California,USA
• Coordinates
  • Lat. (^o): 37.887207
  • Long. (^o): -122.304401
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000025	Metagenome / Metatranscriptome	5578	Y
F000360	Metagenome / Metatranscriptome	1232	Y
F000654	Metagenome / Metatranscriptome	958	Y
F001256	Metagenome / Metatranscriptome	736	Y
F002516	Metagenome / Metatranscriptome	552	Y
F003193	Metagenome / Metatranscriptome	501	Y
F005440	Metagenome / Metatranscriptome	400	Y
F005905	Metagenome / Metatranscriptome	386	Y
F009871	Metagenome / Metatranscriptome	311	Y
F010597	Metagenome / Metatranscriptome	301	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0130086_1003524	Not Available	780
Ga0130086_1005265	Not Available	569
Ga0130086_1008495	Not Available	566
Ga0130086_1011121	Not Available	580
Ga0130086_1015318	Not Available	1245
Ga0130086_1017027	Not Available	616
Ga0130086_1026944	Not Available	700
Ga0130086_1029635	Not Available	583
Ga0130086_1041006	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	589
Ga0130086_1042580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130086_1000575	Ga0130086_10005751	F002516	VARTREVAGYAIPGIVVFFFWLVVVLLAIILLAFIVHWAGGAAFQLRLGHFNMNVGFT*
Ga0130086_1003524	Ga0130086_10035241	F000654	DQLNKVMGDDLTKVMDSIQGVKSRNEKYSFDLGQRGIKPVLDFMDLTKLSENDPNLSFLFQGPLSGLEEFFRGNTFITYKYLKAHALLLELGKLFQVIEKAANCAKQGGTLLVYGVANAQLNALLDSTKSMINAIRDEFTAVCKIAECAFEKLVYENKATVERSKWMSHFQHVFPASNMINDAVKDVLHDVADIKATANAMTLYERFQKAQNDTADFLSSAEGFSQRTAAVLGQEYKKPEIKEDDLKKGSIDNTEALFA
Ga0130086_1005265	Ga0130086_10052651	F015429	MASLVLFTLLVAAVYCAAPVKPNLNNNFIAEVHYHIQRGNEPPRDFNGRWFSDKTNMRDRFDVEISGTGRVDIWQIWNSTKTGNEYIYEAATQNCRKLGYTLEFHGPFDFDQSATYAGACDGTAARWQFIIPNAWEFDLCASTDGLKPYWVEYKQLVAPKFHEIVRFHSYNPGVPDKSNFVIPSACANA
Ga0130086_1008495	Ga0130086_10084951	F000360	DIIPENIHFHLESDSDFSFKNIKSKGSHTHLVITLDKFRTELKNMTFFYKKKTFPVLTDSGVVTFRIGGDGARLKLVFTVDQNSGDNLPRLTEGYADFHIHQMDINFDKSTLTHDVLLPMMSNMWKLQIQTQIEKVVEKNLTGVIQKLGEQLTQSLSEVNRPFIWSGLETAKQAVKKSEIGQVAANRR
Ga0130086_1011121	Ga0130086_10111211	F030647	GANFLLYLRTPCVGSEIETRLGCPVLNSDHVHLSDMTVCMTSSSVHLSFVIQHGGKIKPKIGPKVIHILLALEKLLTLLKFISFIKTCFPIKSSRVTTLLK*
Ga0130086_1015318	Ga0130086_10153181	F070802	PALRIIRILPSAISSIFYISSSVLAIMKQYSSIVLFMLVAISGHAFGAPLDGSNGDCPGGLANGAQIERGRSVFECRNGNVVAKACVADDLKHIDIGSTTDKPAFRLKCNLNSDGSATLEPTACLFQGQERKIDEQFEDATNFYTCKKSEDGLKVITAGCIDQGKRVPLNQQATHDDLVFVCNQTVNNGARMMPSGCVKDGKQYNVGDSFENGNLWFNCTRTGSEKVAAKPAGCVTSGKRVNDGDRFSDNEVIFECAIDQPKPRLIGCSQRDEKGETVERRVGCTWVEGPEPFQYEWACRQESDSAKKVQVRCNYKVGGGVYNIEPGCYRVIDKSAFGCLNSAGSLKLQSFQGDNAEQSAQGAGLHAC*
Ga0130086_1017027	Ga0130086_10170271	F001256	NTSGRDPIFGSMKSIMYPVMGVIFGVAWVILAFIGASLPLDLLLLIVGFIDAVFGIFLIFIPITTFLGLFYMAIGAFTIAITRHSWGGDTGIDFLLALTIIIFLLTGGLTFIAFDWGLGNNFIDRMAAYTPFCDPDMNIYQNGRSTRCQNYAYFVTFCVFLLFLIQPIGMIAAAFKRVGRHHDTTVVVNEKHKENKNTV*
Ga0130086_1026944	Ga0130086_10269441	F024706	MYDTKKFLVSILILGGVIKLLQLGVVVHHAISSYSSTLLVSAILTGIYVTVHFMGLCSAAKERKCGLKAFSVIQTVYVVMHIVGLLWFLWGITSFHHPTSDNLENNQPISLTKLNGDEDILTKPADANEAQSTSSSSTTPCKFSRYVAIGLFSLFILVTVLDLLSAILAWKGYKQLVASEAAVETFTYLSGNDSDIMMTPPVQQPLNVVYVPANLYDPTQLY*
Ga0130086_1029635	Ga0130086_10296351	F021903	DLHSSNQILPYAKLVTDSAQGYGPEVVDFYGVPGQLALGFSSTYSAGAAANAYEVWVDRPNSSPNTDSAFTFLYDTNSFIVVYQADVGNGNKQILFDDRTKVPYAYGFYNTDQWNKVPTTATIWHIIDLSQAAQGIVFNGFPGENNTADTTAYAGAKYGFGSANFEKTKQIPCGHTASRGANPAYCPATLTYP
Ga0130086_1041006	Ga0130086_10410062	F028113	SPIDILKHTPVGQAKMEDLISVDLTEMIELPGSGVHFFQTNQVTSTANYKSVSGLTALRTYIFGRDGIFSIKLGAQGDTEFGDGEWQNIECNIVENATPTVADPEGLIPGWTSYRVHFTTSLGPDTTIRIREIDAASAIS*
Ga0130086_1042580	Ga0130086_10425802	F101386	IPQYSAQRRAERVRLDESIPAVVRFNDGNRTSGRLKVVSLTGGLLSLQRPVRQGSVGKLMFLTPAGSVLGSAEMLTPMSWELQPFKFVDFSGDDHGRLETAIQSFLHKKRKDDQKQQNDRGVFERTRAW*
Ga0130086_1046913	Ga0130086_10469131	F000025	LIFAILAAVVVAQNKPTWPKAASASIFAHGWERRGDNHFIRWWFDQTQGKERVDGPREFLGEFYWTTTILDTMTKRETFIIHQESLITCYQRATNGTIPTPNFANARYVGKAEIGGVVVDHWTERSPDGRDHLQIYDRVDTGYLRRMDFDDPRRGHALTITFHEWDAGSQDP
Ga0130086_1057633	Ga0130086_10576331	F009871	EVTENIEEVKDAVEENTNYIITKDRLPQNKAYARKRVEDIYEHGELAKGRLVENAEHVVHSTIAGIKDAAEAIEDNTKFVIPHDHLANPNGKPVIEKTIDLTDDVNRAIERAKEAQPKIIENTTVDLTDRLKNLVPKVEENITVDLTDRLKNLVPKDDQPEGIKENANWAKEGIKDNVNYAKDVFGENASHKENTHFTQNVLAGNVNYAKESQTEVLAKGLPVDSKDRTPEYSPNINVVLNNPLRFEIV
Ga0130086_1062040	Ga0130086_10620401	F000360	SRDSNREFWLDNITLCGYDIIPENIHFHLESDSDMSLKELETKSSHTRLVIRLDKFRTELKNLKFWYKKKTFPELTDSGLVTFRIGGNGARLDIVFTVEQLVGGRPRLTEGYADFHIRQMDIDFDKSTLKHDVLVPMLTTLFKQQIQTQIEKVVENNLTGAIQKLGEQLTLTLSEVNRPFTGGLESARQALKKSEMAQVYGN
Ga0130086_1067660	Ga0130086_10676601	F010597	MSTCGDEETWRIGTIVCGGAHIAWGLLVVIAAIIGLTLAGTESALVCDKIFELANVTHIEEQIPEEDFNTDIQFGLTFNASEPWTRDTCVKEIFIVGIIVGVVSLVLSLIFFIVPGILGVCGGQNKDTGLVCGFIVCLSFLMVLEIASISASLAMDGTRFEFDSKYTLVSGVVGVVLTCIALIFAGSYRTAVKDDEKAVALI*
Ga0130086_1069418	Ga0130086_10694181	F089744	VHSVKIGLNSIYWRLYALLKAYGCRIISDSYRHGDTSNYCQQQTIIYPSTGNGTGVELVG
Ga0130086_1075125	Ga0130086_10751252	F045048	MASIPIGGHIAPSSTTGERALWKNVQNIAKKNKASESIKNPTPKFNPLCTAKV*
Ga0130086_1077306	Ga0130086_10773061	F005440	GIVRSDLTYVDTEGRTKLDVDMLVKLQTVLIPVLANTFQKIHIPRVESSDPKLDFWADNIVLCGYDILPDNIKFHVERDTELSIREFDTRGSHTRLVIHLDKLRTEVKNIEFYFKRKTFPALSDSGLVTFRIPENGAHLSIYFTIEDRPGENHPRLEEGYAEFAIRKMDIEFDKSTLKHDVLIPMFTGLMKPMIKSRIEKAVETNLTNALKQL
Ga0130086_1084622	Ga0130086_10846221	F078090	VRLDLANQGMLTGLLKNGTDSYWVDMVGRSQSNKFDQVGFSGIWPANVGVSSFIGVCQRCFGEEQILVNVVSRQKGTPCGTVGPTRYTTQYVFRRSSTLQCPNLPSLM*
Ga0130086_1091997	Ga0130086_10919971	F000360	DIIPENIHFHLESDSDFSFKNIKSKGSHTHLVITLDKFRTELKNMTFFYKKKTFPVLTDSGVVTFRIGGDGARLKLVFTVDQNSGDKLPRLTEGYADFSIRQMDINFDKSTLTHDVLLPMMSNMWKLQIQTQIEKVVEKNLTGVIQKLGEQLTQSLSEVNRPFIWSGLETAKQAVKKSEIGQVAANRR
Ga0130086_1104158	Ga0130086_11041581	F003193	SIAVSVLTTTATIGEYADYANFSSLSLATAIDSTVENVARELAYRLGESLSGLVRATADGASSVDSSVLNQLGATNLTTFTTLSLNQIRNSVQSLAGRSVRPFDEASKAFCGVIHPFALGDVLADTSNNSPIDILKHTPVGQMKMEDLVSVDLTEMIELPGSGVHFFQTNQVTTTSNYKSVSGLTALRTYIFGRDGIYSIKLGAQGDTEFGDGEWQNIKCNIVQNAEPTVADPEGLIPGWTSYRVHFT
Ga0130086_1107412	Ga0130086_11074123	F093133	MIQETHSLVKMDVIIVLASLAKLLVRKTHVDAIMKVIHTMKEILFLA*
Ga0130086_1108570	Ga0130086_11085701	F005905	SGIAVVIGGSTPGLTNTANLETNPAPGSDSNARLDIRIRDSASIPIPNAHVTVLIDKGTLAMRRDISSFPNGGYEVIEPVPGAVYFGSNVSGDTCDQATNGWWTQSAVNGNYTWPYSSSSRTQQDGYTNIDGILSACVYVDNTLAPNTTPGKINVQAIVESPTQGGLYNGSAYYNPLYPSNLSLPNYLASPNVVLTATITVVGPPASI