Sample 3300009758

Basic Information
IMG/M Taxon OID	3300009758 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0127549 \| Ga0105211
Sample Name	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	180915659
Sequencing Scaffolds	20
Novel Protein Genes	31
Associated Families	25

Dataset Contents

Total Genome Size

180915659

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	5
Not Available	7
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic ocean
Coordinates	Lat. (^o)	0.0014	Long. (^o)	-33.4979	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic ocean

Coordinates

Lat. (^o)

0.0014

Long. (^o)

-33.4979

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000067	Metagenome / Metatranscriptome	2732	Y
F000068	Metagenome / Metatranscriptome	2731	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000080	Metagenome / Metatranscriptome	2485	Y
F000406	Metagenome / Metatranscriptome	1172	Y
F000786	Metagenome / Metatranscriptome	891	Y
F000879	Metagenome / Metatranscriptome	850	Y
F002056	Metagenome / Metatranscriptome	598	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105211_1002439	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1655	Open in IMG/M
Ga0105211_1005198	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1308	Open in IMG/M
Ga0105211_1005862	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1262	Open in IMG/M
Ga0105211_1013743	Not Available	973	Open in IMG/M
Ga0105211_1014368	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	960	Open in IMG/M
Ga0105211_1024988	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	810	Open in IMG/M
Ga0105211_1025708	Not Available	803	Open in IMG/M
Ga0105211_1035686	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	728	Open in IMG/M
Ga0105211_1040664	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	700	Open in IMG/M
Ga0105211_1050352	All Organisms → cellular organisms → Eukaryota → Opisthokonta	658	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105211_1002439	Ga0105211_10024393	F021543	VVDKPMEECNIEPIKTCKHVTKLVPKLSPVQECVDVPKEICARSKTNPRKVKKPVVKKWCYIPSKESGLE*
Ga0105211_1005198	Ga0105211_10051982	F000879	VCSVLAAVSADPQVILGGLGYPFALGSSLTYTPHVVKPVIKEIEVPVKTITYGIKETGCKNSFGFSVPCLAEGEARRKREAEEEKAVAAPVVTYAAGVPFGYGYGLGLGLPYTYAAAPAITVAEPKVTEVEVPQFVYKAVEEKIDLAPLCHNGFGFPVPCA*
Ga0105211_1005862	Ga0105211_10058622	F050133	MTEFTMIFQVIGLISFTLQSSIGFVVIPYPTYPLSPVSLLYPSHPLYNTRIIPQSPLLIQPSIIQPSVKPEYSTLTPGLKLSPTRSANVNLTEEDEVPLASTRLRARNLDLCYFLANDIFTSHVPCNPNWGDGTLEGVKQYINELTFEANRMIGENNLRFAWKGPYERHDPDAKSPSNPTQDVLSVAGYGCDAVVFLVFNQFSSDCKTQTTGHEFGGVSYGGMCEQEQGLGYTVVVDQGFLKDAWTGPQILAHHLLLMLTSDLKDTKKTCPARESLLYPQMYPGEQRVDQCVVDKLNRSKVSLRKCMQD*
Ga0105211_1012312	Ga0105211_10123121	F002056	LFKEFQISASYEGLVETVPGVKQDLLKMDTYKMDMTKDALFRGEFEVVKELMATLKDGEAAKDICDKVIDKNGTKKTGGTGIKQLRENIAESKLSYEIMDEAAQAFLKAKIMDNIHKYFYLIIFSAYMREAAQKARDMYAEEEKEAVVLTSGKCSI
Ga0105211_1013743	Ga0105211_10137431	F083659	ITGAAILSENDEWFEAAQSFLMDPEPLVTALGAQRVKRDASYDKEFTLGALGLGFGLKYTDPANKMKGGKAYAKFPLKKFISKAHSEMVDLQMSFDGGDAVDGLFTMSVDYTLTHSDGDGKESGTFTVSRKKVGGLWKTELSTTSGSSFAHRLIPLFSITAESDRKTKMHSAYKGTYGSLTFNIDRVPGEKLAAEVDFNGKKYSFVVSINKAAMSADIVINAAGNEYQLNGKVSKTDSWKVSVTGDVKGAIDATMLIKKDYSEAKIEISHKNAKMLQMRLKGSINPDGSFKAKAKFSLMGGRIATGKMEASYENHKFNIIIKPS
Ga0105211_1014368	Ga0105211_10143681	F010519	SKFDSLASRSSKLSDALLRALSRVLNFWDGDAFLFGEVLTADSWERDRLVDTGLDGFRIDNLNSGLNRGDDRNIVASLLGNFLAVIVSVAVISVSWGWLADCDHLGVTLLLECNFNCLGIGGFSLLLVGVSTDFIVNLLNAFSADSAGDWVTLLSVDDDLDGKFNWVANSLKGWGADLGSFNNILN*
Ga0105211_1021798	Ga0105211_10217981	F000080	DLERTEVKKWLAQILEILMAERAKDQKQAEGNKLDALIQKHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMMSSTRDIAPSCIENVDELIERQEKSLSQLDAKRNVVTDLIAKGKVILQNPDKPKFLEGNVKRIEEGWDETKKKAQERLQLLNETKDAFIGYAENNETIANEFEIAEEEIKKVKKIFNLDAANADLKKRQDLSKKSTDTINGLFASINANMATMSITIPEDKKKVLNKEIKAVQDKLEVEGRFRATVQKIEELVASLTAFDNS
Ga0105211_1022618	Ga0105211_10226181	F000068	TKCSKWPKEVCTVSKKPVKKFTPITGCTKEPREICAPAGCGFKEGAEECYDKKQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1024988	Ga0105211_10249881	F068901	LQQMLPEDKKGPMKDEVKEISTRMEILKKTQDRLAFIDDFNKRLAVFDKNVTDLEDWLGEGRNRLDGIKNPTELLSPEDRVTKTMEVQEDITKKSEFCSKQETEKAEIFPKQGEKMSSDAKKFVERLTNVRSELNNLDAEIKSECAKFSEDVKYFAEFQTGIKAFEPWMRKAEQRIIDGLAQPKSLVEACEILGDSKVN*
Ga0105211_1025708	Ga0105211_10257081	F047103	LVGHWTKCAKNGNIWPKMTKNAYFGPNLADFGPNILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCQYLAQNASFRPNLAVFGPKIQFFGGRE*
Ga0105211_1025709	Ga0105211_10257091	F000067	MFPLAEVLLVSIILGLTTSAYVPTTTQPSPQEYPGPAPQPEYDPQIGQTNVDGYSRNQNPYCHMEEKVVFENQCEPYIEKTCWTQNEEDCKPVMYKNCTGVIQTKVDRVCFNVNELVCSLVEAIHYETLEETYQVQRCFTGKDRVCDTTFKIDTTTKDDYQCINVETPNCYMEEKVINDVTCTDTVEFDCKRVKSTKNDGYGAPDVMCTRTPKQDCYNIPRKVCWLSI*
Ga0105211_1026341	Ga0105211_10263411	F000021	KKVCDKVIDKNGTPKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKSKIMDNIHKYYYLIVFAAYMLEAAELARNVVSDELKSEVTLKGGKCAIPANQLKLVKTFGQFMEENASLRGLIETGKGNLQWERDIPPAALANLEDLAAKDFKGNLGKIIHDIYQTAHIMFCDMPQGDHKKRAKYRFASKTLMRILPSGLKTEVEGLIETNKMTLDLYEILGQCTWTTPAQ*
Ga0105211_1035686	Ga0105211_10356861	F000786	MSLSEVESDLPEDIKERALSCFRAAISDKCTIQQAIEKVQKDALSEVETRFKGQRFKVNNFTSQKHDLILTKGFIKFDYNTNVITINVNKFGNGNAQFSVGMGVKKMVCPDPFMGKLSDPNMNR*
Ga0105211_1038975	Ga0105211_10389751	F000073	MEENAGLRTMIDTGKGNLQWERDIPPEALANLEGLVAKDFQGNLGKIIHDIYQTAHVMFSDMPLGDHKKRAKYRFASKTLMRNLPAGKKTEVEGLIAKSEMTMDLYEILGKCTWTQPK*
Ga0105211_1040664	Ga0105211_10406641	F066422	MSGLCLMDGLPLTEFRILGEKCSTMPDMRDEKNRRMEFSTNTISILNSLEMMGYKVVTSGAFAGSNIGSLSQKEFIWTLHRSSSELEYL*
Ga0105211_1046815	Ga0105211_10468151	F000052	QEEECEENFRKSCFIEYEKIAFNETVEICRTPLVKDCDVQGPEICRTEVEEKCEDETSGYTTNTKCSKWPKEVCSVSKKNVKKYTPITGCTKEPRELCAPAGCGFKQGAEECYDKTQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLTPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1049896	Ga0105211_10498961	F000021	MDTQVKVEIMDDAAQAFLKTKIMDNIQKYFYLIVFAGYMREQAAAAREAVEADKKAAVALPVSGKCSISATDLKVSSTFVQFMEENASLRTLIDTGKGNLQWERDIPPEALANLEGLAAKDFAGNLGKIIHDIYQTAHVMFGDMPQGDHKKRAKYR
Ga0105211_1050352	Ga0105211_10503521	F004957	MNVFAVFLSLIVSVTCLKPCPGDTRGDRRCNHDSTHRVCAKIGVEGTSFWEFTGQTSWCGTIGNYGGPYGSLPRCPPEEPTWCICKWATARWIAGEGCGDAVEFDCDATDVCDLKASYLDFNVNLKPAHDCMEKKCKEQWDACPDNRVSNGV*
Ga0105211_1053979	Ga0105211_10539791	F000406	GKKKIDRVLDICGPIPKGTGIQNLRECVIETKWKYDVASEDKQVAWKALILDFMERYFYLICFATYCLEEGPGGYNHSFSWWMDEHKDLRIMIDQGKDKLEWYRTVDAAKLEHLKDMMNAPDYKENLGTLIRTIYDFAFVTYADLPRGPIKNNSMRRLAATTLLDILPPAIADRVNKKMEEDPNGSHDFLTLVGLVSYYGADDD*
Ga0105211_1057891	Ga0105211_10578911	F000052	IFCSTDFRSLNIAILYKGCPTHSYSFILVKDCDIQGPEICRTEYESECWTKQEVHDVEDDVVECKTEVEEKCEDETSGYTTNTKCSKWPKEVCTVSKKPVKKFTPITGCTKEPREICAPAGCGFKEGAEECYDKKQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1059534	Ga0105211_10595341	F075646	MTFSPLIIWAKATFFFEQLFLVVARTWLVTKSECLFFGPKFRFLAQKSDFCHTTPIFVDDPFLALDMTVNFPPWKPFFDFPFRSYSCFRKKIRLTPQKVFPPLTVGVPSASKSPSALSAQALRARALRARA*
Ga0105211_1064221	Ga0105211_10642211	F004175	LIDLTLACEDGNSKLVEVVTVADVDAEDHVGNSLLQIWELTFGPKAKL*
Ga0105211_1064667	Ga0105211_10646671	F030654	DTQMVTVCQPTPGYGYHSYGHNYCKEVAQETCYNVPVVTPVDPAVEVAYPEPIKTCVNKPIDLIVISCEDLTAEKCITVPEVMDDIEVEEKCITQLAAPACQTIDLTLPKQVCKEINYGYAEDVHEVEPVTYAPEPEYPAPTVVPAYSG*
Ga0105211_1071338	Ga0105211_10713381	F066422	MPYLLVRESFMSGFCLVDGLPLTEFRILGEKCSTMPDMRDEKNRRMEFSTNTISILNSLEMMGYKVVTSGAFAGSNIGSFSQKEFIWTLHRSSSELEHL*
Ga0105211_1087077	Ga0105211_10870771	F003611	PLTSKKQGIIKDNMKEIFYALYFALHFVGAFLGLVVAIYVSTWLGLSMFLFFIIKFVLRLSTP*
Ga0105211_1099485	Ga0105211_10994851	F015490	MSCSPDHTSATDGCSVFKFAGDGVSVQQIFGGPAWSNQAAGPLDGNNGMPVVVENSAGIFDIIPGNQIDFSVSCTTAETVDVAVSITYAP*
Ga0105211_1103555	Ga0105211_11035551	F088751	SYRDSNETPFSCKHSVKLQLAARGKNVLFPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHRVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKHFPPLFGQRHF
Ga0105211_1112605	Ga0105211_11126052	F004175	VTLACEDANSKLVEVVTVANVVDEDRVGNSWLHTWKLRLGNEAKLLFRAQGLVKILK*
Ga0105211_1119216	Ga0105211_11192161	F014224	YKEDCEYQWEGHGNDKVWAPIAGTCKSNPYETCSDVTKSKAVQVPYPVCRDIPEQKCVDVPRQECVQVPDQVCTNQPLQKCQDVPRQACQQIHKKVPNRVSRKVPKKVCQDTGSHLNGVAVGNGPVVIDARKNEKSVQFEEGVETPNSIVIED*
Ga0105211_1127755	Ga0105211_11277551	F000068	TGCTKEPREICAPAGCGFKEGAEECYDKKQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1128505	Ga0105211_11285051	F000073	IREAAILCKDAASDEDKKNFALTGGKVSTPADKLKLPKTFAQYMEEHSNLRTVVEEGKGKLQWERDIPADALANLEDLASKDFKGNLGKIIHDIYQTAHGLFRDLPQGDHKKRAKYRFASKTLMRVLPADLKAEVEGLIDKEAMTMDLYEILGQCTWGKN*

Showing 1 to 31 of 31 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009758: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences