3300009719: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_260_2m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300009719
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110190 | Gp0141789 | Ga0123383
• Sample Name: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_260_2m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7033440
• Sequencing Scaffolds: 10
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1
All Organisms → Viruses	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Louisana Shelf, Hypoxic Zone, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.8679
  • Long. (^o): -90.4764
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000826	Metagenome / Metatranscriptome	873	Y
F002870	Metagenome / Metatranscriptome	524	Y
F004408	Metagenome / Metatranscriptome	439	Y
F009292	Metagenome / Metatranscriptome	320	Y
F011139	Metagenome / Metatranscriptome	294	Y
F022637	Metagenome / Metatranscriptome	213	Y
F024806	Metagenome / Metatranscriptome	204	Y
F030104	Metagenome / Metatranscriptome	186	Y
F046392	Metagenome / Metatranscriptome	151	Y
F061886	Metagenome / Metatranscriptome	131	Y
F105151	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123383_101703	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	814
Ga0123383_105944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus	821
Ga0123383_107760	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	715
Ga0123383_108774	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	643
Ga0123383_109907	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	545
Ga0123383_110514	All Organisms → Viruses	750
Ga0123383_112936	Not Available	558
Ga0123383_113041	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	649
Ga0123383_113072	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1082
Ga0123383_113189	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1382

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123383_101703	Ga0123383_1017031	F011139	MGLFFIALAFLPVFYNFYNTYNKYVATIPMQNSILQTSAFILFIMSLYCTASMLPCGRYYYEPEGGYVGNP*
Ga0123383_105944	Ga0123383_1059441	F105151	MKFIQYCEDMLNISIQDVLDNYEKIKKDLERYNRDKNSELIQSLKEIDITKLSQKQLDNVVKFLRNVGDDEKTAYLLYILDNVTDVTNPKLKKFLLQFEDLLRTIKKINKPGSK*
Ga0123383_107760	Ga0123383_1077601	F046392	MSHIRIDKQKAVKKWAPVLENMGVAGERVDWMAEYAEFHSINENAYANASNVAGMGGV
Ga0123383_107760	Ga0123383_1077602	F004408	DMNFLKFLNKSQVDSFYALSNDEQETVKLHINERSYYTQKDVLSLIAEALSTKNESLEERVIRLMPENIKPIWEQLAETSKKSVLSQARLYPEEVLQTESQVEHFWNTRNLKKNESVTKKLVAHESLIQEDKISDNEAQAILERFKNL*
Ga0123383_108660	Ga0123383_1086601	F000075	KMKFFALAAVAAVSANQYDLMGEDELLAQLSSTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0123383_108774	Ga0123383_1087741	F000826	LIAAAAAVQRHHHHPHSVEYVATLPDVRADTVSDEDIAAHEAARAEAAKVKKNPQAELLATVKADLDQISKDLSFGVSYSQAKRNDHARGLVTKVTTAIKGYADGILAQVEAKTNESMTEQNAHNISAMIFYDVQVQEFASGLGMAIPDDYNLAINRLKTLQKLYLFEQKGGENYLA*
Ga0123383_109907	Ga0123383_1099071	F061886	MQYVANNPDGLSGEVIDRSKFRDHYTNEYVWVERNHITDVGVKYDGLSRAVDHKPSHWRCEDEIERGKEYKRLNDECADKIADNRYSIENSREWLVDNGGVVDRVHRMSAKTLKTRYDLDSIRRNMENLKSMRARLLKN*
Ga0123383_110341	Ga0123383_1103411	F009292	DTFNSILKGARDEKKDISDHYNITLTVMVKRIPESTATHTNDVFAGGKSLKDILDKGFPYDDGDNSIDDQTANWSKKNHKGQIQVGKLNGENVTKSALVNLIKDTDAPITQALVQLDKSDSDGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDSDGLFKLMDANVTR
Ga0123383_110514	Ga0123383_1105142	F022637	MSRTYRKQPLRNQFRHPRTFNEIRQKSEDYRDTGYTVNTRNRDIPTAWDDITASSIYQNDHQS*
Ga0123383_112936	Ga0123383_1129361	F024806	MVTNSDFNFTNNETVILELPFSEHIDELRQRLFHIFWIILGLTFISFIEVKLLVKILELPVDNVKFF
Ga0123383_113041	Ga0123383_1130411	F002870	FAKMTLAAMAVEAASVESAQSLVQQALLHVEAGSAAEMHLQSAMNAMAGTKFTDAEILEQHSQKVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKSRGEAKDTSDYYNVTVSMMIQRKPVEAAAAPAADPYAPNGAATLASTLDKGFPYDD*
Ga0123383_113072	Ga0123383_1130721	F030104	MALMAFDDDQEEVIEFMDTSFFNFFSLIIFYLCFKHSIHYFAFLEASVVEGRTVGFIAKQFFRDFLNTFSLMLRFYTLLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTILFTLDNHDDRSFLLE
Ga0123383_113189	Ga0123383_1131891	F011139	MGLFFILLAFLPIFYNFYNVYHKYVATIPMQNSLLQTSFFIFFMMSLYCSASMLPCGRYYYEPEGGYVGNP*