3300009718: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_248_2m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300009718
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110190 | Gp0141787 | Ga0123381
• Sample Name: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_248_2m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4140513
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Louisana Shelf, Hypoxic Zone, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.8679
  • Long. (^o): -90.4764
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F001926	Metagenome / Metatranscriptome	616	Y
F005667	Metatranscriptome	393	Y
F024715	Metatranscriptome	204	Y
F028388	Metatranscriptome	191	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123381_12352	Not Available	670
Ga0123381_12995	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	693
Ga0123381_15322	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1392

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123381_10408	Ga0123381_104081	F028388	AGYNIFDDLLNDVLKPAIKHAIENLIPTIGKHLGDLADKLKPAEYLSITDIMEAAQQLKDIFNQIKAKIESGEVQDNVIDFLNKIKAVVEAKIAAATPAVKAILEKVDAAVKTVIEKAKAHVESGKGLLADLLETIIAKISELKDNIAGYNIFDDLLNDVLKPAIKHAIQNLIPTISKHLGDLADKLKPAEYLSITDIMEAAQ
Ga0123381_12352	Ga0123381_123521	F024715	QSLFACLKPSAEVPKTGIMSALSYSWNVRGTLNGDFMSASGTTAVNEGIGEVHGTAGEGAPFNHSTWIWGGLGHYGLAWLKGGHKVNPTEKYPYHMTRHWWGEDGAHIWSSHTITGAEGAWAGDIACVAEYFVPGGAILGGYVRGQYPSHWVATKRSDKEVDVHGIVTLKLENGGTYTAHVHEYMKFWEPCVTINRHYWKLEYLEAEYYPTHWYHKEKAVAD
Ga0123381_12995	Ga0123381_129951	F001926	VRHEEIPEINNPKTRFPVLEGDKLKKEVLNGGYNVHPVPPPNSEIKERITRRYERKRIKIEKLLTLGYTTSGDP*
Ga0123381_15322	Ga0123381_153221	F005667	MADMVPEVGTPQRQRWAAKGVVAGCIGLVVLFAVAQSPFAPAAAKPRQLSQIVVTPPREECAKTTDSSCYAQKCCQTTGYTCYLVSEGKAKCMKSCTAGVDGTCLARVVTADATKSDVTLSSTNLFCFAVYMQDTGSTKKSYELELLRTNLFLGSHIFGCEAYKVYSDVSTWLSPGDVDTDMVTELPGAPFHFAKRKETGTWINSNIFLAVWKKIEEQGLWSDKDWTVKVDADAVFLPSRLRSKLLTQEVTSNGIYMENCKYVNFGFFGNLEVISRKAVATYLASLDDCKTSLNYLGKEKDYGNEPWGEDLFAQRCMDLHGVDKVSVFDLTTDGMCEAFRPEGQKKNKKWTPDCATTTTAGMHPFKNPKVFFDCLKATQR*
Ga0123381_15474	Ga0123381_154741	F000075	KFAAALIATVAANRYESMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*