3300009596: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWTFFsm_matched

Overview

Basic Information

• IMG/M Taxon OID: 3300009596
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0127784 | Ga0105156
• Sample Name: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWTFFsm_matched
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78762855
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Nevada, Gerlach, Sandy's Spring West
• Coordinates
  • Lat. (^o): 40.653
  • Long. (^o): -119.3749
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F060592	Metagenome	132	Y
F063403	Metagenome / Metatranscriptome	129	N
F068875	Metagenome / Metatranscriptome	124	N
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F087248	Metagenome / Metatranscriptome	110	Y
F088087	Metagenome	109	N
F104050	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105156_1000085	Not Available	13712
Ga0105156_1000137	Not Available	11092
Ga0105156_1000246	Not Available	9277
Ga0105156_1000382	Not Available	7714
Ga0105156_1003976	Not Available	2162
Ga0105156_1004290	Not Available	2051
Ga0105156_1004784	Not Available	1895
Ga0105156_1004960	All Organisms → Viruses → Predicted Viral	1849
Ga0105156_1006439	All Organisms → Viruses → Predicted Viral	1516
Ga0105156_1007811	All Organisms → Viruses → Predicted Viral	1301
Ga0105156_1008722	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1196
Ga0105156_1024855	Not Available	534
Ga0105156_1025252	Not Available	528
Ga0105156_1025269	Not Available	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105156_1000085	Ga0105156_10000853	F063403	LIVLVDSNPEKEDLNLEEAMFLMEQNISRAEALNALRVAIRSVRRSPIKLPFGDDERFFIEIRIPRFAERLDLQMAAQLMLAGLGGSERLVAALPSLITSFRLPAETESGEIMQAVYNAEPLPDIPVLNLTPADLFSDSSDFNATPMLMTMIITALMELSGRTQTVAAGVNELLELFPGTNSNSANILEQGSSRVSGNQ*
Ga0105156_1000137	Ga0105156_10001375	F084856	LTEVLYFHDGIIRPAERGDVMPNVSDLIIVTHIYSKSHLEALSETLPEWRKLAPSARILVGYYANRFQASEFGTLLAENVELVPVHNSSYGAAYDTLLERTIGQPILILAPYAIPKEWFIGAHGSLFSWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGTILVRARPGAYLLYNALAAGYPVMTLARNCNPVRYVKRADKKAEKW*
Ga0105156_1000246	Ga0105156_10002466	F104050	MSEVKKCIIRLRSYCVVYDSLVNEEKQKYGRKEYVVTYCGICIKSYYAKAKMRLINKFSVVNTL*
Ga0105156_1000382	Ga0105156_10003822	F060592	MPREELDPRLKELLDKDPVAFFHALADLYVQGLDPKAMGIIPSNPVTKKVKSPDRWAKQQIENAVAAASDWLDGVKNPARNPIEAALDKKDKWIDRLTAAIKDDKWAKNLKKVSPGEIIEVAEKVGTSAYATGITARESKIKKRVAELQPLVQAVSDAIQAMPDKTDADREKRLLTARKLMIEVGKKRAGA*
Ga0105156_1003976	Ga0105156_10039765	F088087	MQSAMLRASDGSVWRAIGVSQSGCEICRRKAAAIYECVEGKWAGVRVVACPEHAQDAIEKFIAGGEE*
Ga0105156_1004290	Ga0105156_10042903	F060592	MSQYIIFAVNPFFHGDVMPHEELDPRLKELLDKDPAAFFHALADLYVQGLDPKAMGIIPDNPVTKKVKSPDRWAKQQIENAVAAASDWLDGVKNPSRNPIEAALDKKDKWIDRLTTAIKEDKWAKNLKKVSPGEIVEVAEKVGTSAYATGITARESKIKKRVAELQPLVQAVSDTIQAMPDKTDADREKRLLMARKLMLEVGKKRAGA*
Ga0105156_1004784	Ga0105156_10047843	F104050	VSEARKCIIRLRKQCVVYDNLVADEQQKYGSKEYVVTYCGMCIKSYYAKAKMRLINKYSVVNTL*
Ga0105156_1004960	Ga0105156_10049603	F068875	LITPRLDDVSSERAEAITEEIGATTYYVRDAARTITATVGQLPTEWAQRVAELRCQANLGVFLIDANGTIWGRKVDTNTGVAGAALPVVPSSIDVRFAFPSYSSVQKHTITFQLPFSLADYEIIPLWNDASYLDYVAPQPVGFRVYPSGGDWVVFLFSKYHAPNGTIVVPIAGATPVNAIEIYDENGTTLVAQATSDLGGGRYKLNNALTSGTRYILDCTAVTNPPRSAFDWVSIRVPFRA*
Ga0105156_1006439	Ga0105156_10064392	F104050	VSEVKKCIIRLRKHCVVYDGLISDERQKYGSKDYVITYCSMCIKTFYAKAKHKLVNKFSVVNTL*
Ga0105156_1007811	Ga0105156_10078112	F104050	MIGKKCIIRLRKHCVVYDSLISDEQQKYGTKDYVITYCSMCIKAFYAKAKIKLVNKYSVVNTL*
Ga0105156_1008722	Ga0105156_10087222	F013155	MELYQAVVVAIALANLAVTAWLLKLLLPIWRGLREVVFNLDNWDFDKLAQKFLSGEKPMAESVIVKTSENKEGYREISVTRVYKKPLDAKEVWEGIVRQMAEKMQ*
Ga0105156_1017521	Ga0105156_10175212	F087248	HNGAPLGTGWQELVPPTTLPGAANTWGRIEIPASGDGYYDQYRIEVQRTAGSNYILTSKIIGVR*
Ga0105156_1024855	Ga0105156_10248553	F104050	MGAVSEKKCIIRLRKHCVVFESIVDDEKQKYGTKDYVITYCSMCIKTFYAKAKHKLVNKFSVVNTL*
Ga0105156_1025252	Ga0105156_10252522	F080678	MFARKIDAKTTPIEAVYNDWERVWLSAETIKRFLAISGLTAPPYNLRVEDFLKFPHLRGMAARRFVRKLRQFGVTWSWNDGVVRRGVLQAVGYKLREIEEFEHNCIFGRKEVSVNV*
Ga0105156_1025269	Ga0105156_10252691	F060592	MGIIPSNPVTKKVKSPDRWAKQQIENAVAAKDDWLDGVKNPARNPIEAALDKKDKWIDRLTAAIKDDKWAKNLKKVSPAEIVEVAEKVGTTAYATGISARESKIKKRVSELQPLVQAVSDTIQAMPDKTDADREKRLLMARKLMLEVGKKRAGA*