3300009558: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 12m depth; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009558
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0147226 | Ga0130023
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 12m depth; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39142879
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F072114	Metagenome / Metatranscriptome	121	N
F080037	Metagenome / Metatranscriptome	115	Y
F097314	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0130023_102211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1173
Ga0130023_107078	Not Available	726
Ga0130023_118127	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130023_102211	Ga0130023_1022112	F000325	MKTADGNAKLGTGCIVVSRPVGDTCPSTCIYLDKDCYALQTEKQYKNAREAGFANVITEIAKIRSMLIDAIKRGKSIRFHERGDWFLDGKLDEDYVNNVCVACESVINSGYTLPDMWFYTHIYDSRLPSKLGKYMAVYASVHNDDDMNSAKAAGFKLFAWCDSDMKIAPKRPKRKGPKRDAWHKALSKLVVLSGETFVTCPEIRKGRDFVTCTGNKDSRACKM*
Ga0130023_105087	Ga0130023_1050871	F097314	MQVERESILRDVSRAANGATVNIQLSYTPFLNSMTNVLVLAANSGINQVSNTNANVLVFQNGQKLIPTIQYIISGSTVGINVNTHYDGANYEVVVNGVTKG*
Ga0130023_107078	Ga0130023_1070781	F072114	NRPVMIKLFIGGQEVDLNQDQVNVTIDYSIENIDLGNISGAHSKRNVTLPATKTNVGIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFLASNFKVSLIGNNADWFADVGNTLVRDLGWSTIEVNETSVKENYDPVTAEYCFILMKWKAWENETYITNNEMTPAIFIWQVLKKAFENKGYQLNSIFTTDPFNRLIIPMGLELGADYLNDFVNLRASIPSPALVSN
Ga0130023_118127	Ga0130023_1181271	F080037	MTQALAYAAAIRDNAQDDGQPIPMDLVISFEDDYNKIIASPGLGI