3300009555: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 8m; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009555
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0146830 | Ga0130031
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 8m; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12167573
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004260	Metagenome / Metatranscriptome	446	Y
F032675	Metagenome / Metatranscriptome	179	Y
F077986	Metagenome / Metatranscriptome	117	Y
F080037	Metagenome / Metatranscriptome	115	Y
F082628	Metagenome / Metatranscriptome	113	N
F086646	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0130031_100437	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1704
Ga0130031_100491	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum	1561
Ga0130031_101492	Not Available	826
Ga0130031_102181	Not Available	691
Ga0130031_104018	Not Available	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130031_100437	Ga0130031_1004372	F004260	MNIETHLLNHLKADQQKFALEALKRPQERDTFEYGYRVGVVAGYEAAIKVLLTLIDEEKNGNNEL*
Ga0130031_100491	Ga0130031_1004913	F086646	LASYQRKNESGDIIMDFIFSIKNHYFEKGTPWVELDKIKQRCWFLSVDIEDDETVPCYDTGDERYSTGVDYRIDEGIAFKSVQILTSKTQETHPYWESLLDMSYLYSTELRDVTFKDLPSESGIYMLNIWFDHDGEELNFGDDFKKLCEHRHKWDDEWVCSKCGVRKSDWVELDKIR*
Ga0130031_101492	Ga0130031_1014921	F080037	SPVINRLHDCMTQALAYAAAIRDNAQDDGQPIPMDLVISFEDDYNKIIASLHEAHHLAS*
Ga0130031_102181	Ga0130031_1021812	F082628	MGYVVVYDKFLEDSTWLLNARRTFREKKEALTFARDCEHSAYTANVKVYEL*
Ga0130031_102181	Ga0130031_1021813	F077986	EGTLVWIVASVEDDALQVNCDNDEIVVEPHGFRAMPLYADKQWVKPLTEEEIQEYNRNL*
Ga0130031_104018	Ga0130031_1040181	F032675	YVGRECDWTPAASGSTSTGLSATYLSAVQGTSGQFQITGFSHNVNDSLTDAYVIATVRMNEAQYKASVNTIA*