3300009539: Microbial communities of aphids from Brassica oleracea in Tucson, AZ, USA - Brevicoryne brassicae seqcov

Overview

Basic Information

• IMG/M Taxon OID: 3300009539
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118459 | Gp0139337 | Ga0127521
• Sample Name: Microbial communities of aphids from Brassica oleracea in Tucson, AZ, USA - Brevicoryne brassicae seqcov
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Texas, Austin
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 281683917
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini → Aphis → Aphis → Aphis craccivora	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities Of Aphids From Plants In Several Locations Around Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Aphids → Unclassified → Unclassified → Brassica Oleracea → Host-Associated Microbial Communities Of Aphids From Plants In Several Locations Around Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Tucson, AZ, USA
• Coordinates
  • Lat. (^o): 32.23184
  • Long. (^o): -110.950699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029983	Metagenome	186	Y
F060091	Metagenome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0127521_114866	Not Available	1422
Ga0127521_118266	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini	3988
Ga0127521_146264	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini → Aphis → Aphis → Aphis craccivora	1806
Ga0127521_168310	Not Available	1479

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0127521_114866	Ga0127521_1148661	F029983	MSLCCTVGYKLVTVMDGXXFEFNDLISSYTKNDSEWRRFV
Ga0127521_118266	Ga0127521_1182664	F029983	MSLCCTVGYKWVNVLDGIIYFEFNDIISLYTKNDSXXXRFVSLGFFTLD*
Ga0127521_146264	Ga0127521_1462641	F060091	MDELHDLNYKLDLSSESDSDEEMNELLLLYSLSKRNKSIWKSAYMKKRKSYGEFILTSEFSDKQFTNYFRLNRNQFNEVLSVVNDKIYSVGCNAQKPIDPEEKLAVFLR*
Ga0127521_168310	Ga0127521_1683101	F029983	MSLCCTVVYKWITVKDGIKFEFNDIINDSDRRRVLSLGYFI