3300009429: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844 no min length

Overview

Basic Information

• IMG/M Taxon OID: 3300009429
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114926 | Gp0118608 | Ga0120406
• Sample Name: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844 no min length
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 791626083
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	1
Not Available	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Diffuse Flow Fluid → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid-Cayman Rise
• Coordinates
  • Lat. (^o): 18.374735
  • Long. (^o): -81.797326
  • Alt. (m): N/A
  • Depth (m): 2376

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025922	Metagenome / Metatranscriptome	199	Y
F048391	Metagenome / Metatranscriptome	148	Y
F054534	Metagenome	139	Y
F104458	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120406_10001204	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	883
Ga0120406_10390597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	2696
Ga0120406_11303795	Not Available	545
Ga0120406_11431387	All Organisms → cellular organisms → Archaea → TACK group	1065
Ga0120406_12733040	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	758

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120406_10001204	Ga0120406_100012042	F048391	LREIGDKMNDSETVRPINSLDYLEELLNAGYSIKGPRTIRNPEADSGRDLISFKAFLKKGKEFAPEDWLSRMGYKFVEPNTFTKGHRIAYKIIDEFPDERFKSSYSLLKGGKEIPLYLKVELPKIE*
Ga0120406_10390597	Ga0120406_103905972	F104458	MRRGWEVEFLDGTIIDESQMNWRKVPKKNIIRLTLRYDGREWNIHNKEAYLQKKRGSVIPGVASSFSVESRSIGWFEDNKKIWMTVDETTGRMRLEVEEF*
Ga0120406_11303795	Ga0120406_113037951	F025922	RRMKDMARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIVDVVDDVPAVAVTLNTNDFGDVRTLAVLAQLPAVKRAMDATADSTTGNLVVVSGTDYTPTSTYLHGVSLADFAVVCGNLPGVTMWAPVQDECSLGTLDNNIDQTLFLDEVYVNSLEFGYTTGANATENYG
Ga0120406_11431387	Ga0120406_114313872	F054534	MSEKEVTEKDYEEIVVKLAVSNDYLKKLEHLIDVKRIFSSRAEAFRRALELLFEKYKETLGESQTS*
Ga0120406_12733040	Ga0120406_127330401	F054534	LTEKVEQEREYEEITVKLTLSNDWLRKLDTLISTKRIFSSRAEAFRRSLELLFEKYERELS*