3300009405: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 2.7-0.2um, replicate a

Overview

Basic Information

• IMG/M Taxon OID: 3300009405
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137041 | Ga0117914
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 2.7-0.2um, replicate a
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 321164189
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → Viruses → Predicted Viral	3
Not Available	8
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 314

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033867	Metagenome	176	Y
F037175	Metagenome / Metatranscriptome	168	Y
F040057	Metagenome	162	Y
F059474	Metagenome / Metatranscriptome	134	Y
F061392	Metagenome / Metatranscriptome	132	N
F072238	Metagenome	121	N
F077161	Metagenome / Metatranscriptome	117	N
F080488	Metagenome	115	N
F081217	Metagenome	114	Y
F088382	Metagenome	109	N
F093994	Metagenome	106	Y
F097135	Metagenome	104	N
F098015	Metagenome	104	N
F098023	Metagenome	104	Y
F103071	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117914_1011402	All Organisms → Viruses	4668
Ga0117914_1014852	All Organisms → Viruses → Predicted Viral	3780
Ga0117914_1015767	Not Available	3601
Ga0117914_1030333	All Organisms → Viruses → Predicted Viral	2146
Ga0117914_1034403	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1949
Ga0117914_1037066	All Organisms → Viruses → Predicted Viral	1837
Ga0117914_1046899	Not Available	1530
Ga0117914_1063342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1220
Ga0117914_1065519	All Organisms → Viruses → environmental samples → uncultured marine virus	1189
Ga0117914_1074049	Not Available	1087
Ga0117914_1075372	Not Available	1073
Ga0117914_1080758	Not Available	1019
Ga0117914_1099023	Not Available	863
Ga0117914_1102206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	839
Ga0117914_1116168	Not Available	733
Ga0117914_1120159	Not Available	700

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117914_1011402	Ga0117914_10114029	F098023	MKTFKELIKEYDDRTDRYVADEIKRRKLARITVNATDDRKMIKGKADFTMDHHTGSSTIHVYLRKMPGSTKGVVAYNYELKL*
Ga0117914_1014852	Ga0117914_10148523	F080488	MKYKDWYSVGVEQGYLRKYTTRLVDGLASNIKMFQKAFTPSVKDKIGKSTTDTMEKYGHQLYWLMIQRDMMDNEKYWEETDDV*
Ga0117914_1015767	Ga0117914_10157671	F072238	IEYRNILDKELPTTTNTGNSTKSLELIKWIEERTNKDFSYLYEPVWIYDGQKEYRYDYKFVTAAYEYLDSINIDENWNLVSQLSKDLIPNFSSLSLMYSPPESKTHKYYFMTDKINEVCLKKVIEEFPYMCNSLDDIQWNTNEWIGHMIAMPKGAFMSFHRDNTDDRPFTLLNYLNIDRTREDGGCFRYIIHKDYDVEDKESLDWSKYPDYLYYESVPQEDVENVKSLRYKYHNPPNKTPEYLESIDKFKNYNKYDIVANYTTVNILLHKNHKTKEEDKKYFVLETPPSSDYTGEQGIPHLVTKNKSDEVRYTLYRRVVWKEYLNELSRSVVWKDIREIK*
Ga0117914_1030333	Ga0117914_10303333	F077161	MRNLSVPEIQARFNNHQKLHRFEVDELFKNIKHKPFTEMQYRYLEIGIRHQFIYDIETSDFSPDQNFIICYHGILRDIVTGKIEHVQDSISKKDIKKAVDEHSFDFDRRLLQTLSHNMKQAHHVIGHFSTKFDNPYFRSRCLITKQYDLIPEYGYQFYGDTWRMMKTSMKAKRNTLKNFITQTTGKDEKTFVDLKYWYITHFKDHKLWQKAMDYIIDHCVKDVKTTYEGLKKAEKFNNIGRAKA*
Ga0117914_1034403	Ga0117914_10344032	F061392	VVAKKLLMICAVFTVGLFLSLQVFASELDKPDPAFKLAAALSPIDGGKLYIGGIDKDKKTFRLHLRHIGKDSKWVYYYASASAFVNEDGDVEADSAVASIEYPHYTASVIGNTFRKATVRILFSHRGEGKGFFEEAGQVIFQECATKTFEAKNWHCTGWEYLGTLPGFQ*
Ga0117914_1037066	Ga0117914_10370665	F093994	MLSKVSLRLKLSDFINTDIEEKVMNRINEAHNELHTSVLLYLWFEEDDIRGTDLKKFLMRWEEKLSFKTIVKQSYKLKVNEYVFFDIIPIGTPDKEVYKRFSYKYINSNKVLDGLQEFYNVVKFTTSEKPIKKQKRN
Ga0117914_1046899	Ga0117914_10468996	F097135	MVISLLIELVNSLGLPSVIIGCSFWYINRKDQMHAAEIDSWRNKDDTSDERLIGLINSTNTRNEEFKVALGDQTAAIRELVVEMRGSRK*
Ga0117914_1063342	Ga0117914_10633421	F088382	NELLDEVERLREEWERSREIIESARQMRIAADGYISTLEEANKALAECVNGALEEMERLQKVNKEIARAAEVMAQISKTLE*
Ga0117914_1065519	Ga0117914_10655193	F037175	MGLVFHTNHINKRFVRRVIENTLINIKEYPYEFLQLWDIHVWGLDDTNPQFFEHIKTTSGQKINPNMPSGVTGLYRMDLYLHDSSNSLKERENSDRIMHELCHARLIGTTDFVSGVHDNIDNRFSTTFWYWNKYKYTRFILSIIDIREFL*
Ga0117914_1074049	Ga0117914_10740491	F098015	HHLRPNQGEKAVRDSSDTQPDREARSLQMKLDNAQKAGFNETEKRAYLGRLVSLGRAKDLVQKGSQGKGFKLR*
Ga0117914_1075372	Ga0117914_10753722	F103071	TIKREKNRLFNLEKSAEAIGRPIQLTEEQKADSGPIDFAEWRNLKMKEDALISQTERRVIQGDLLDRDAVMTEIGAAFHSAKTKLLTIPTSVAGIVATETDASVIKEIIEGLIREALAEIGTAGARFGSPIDNETTAEAHG*
Ga0117914_1080758	Ga0117914_10807581	F059474	AIDRNETLEVVSVEDPAIDVANSDIEAYKDSHDLKHLSFKDGESPTTFHLGTITFMKFAEIKDKHISFDLGGDGQEINTNLFGLTADSLRHSLKKADNLPFPLKIERGRLSDTTMDKLARLGIVEELGNIALNLNGFGDDDEKK*
Ga0117914_1099023	Ga0117914_10990231	F040057	MKPNIEDTDIIIRRAANGWVAFSGSEYESDHFITSVYEDDESEWGEHKALIGLIQEHFSGFTQSKKHGGIKLEVRENGYAFEGDEGNE
Ga0117914_1102206	Ga0117914_11022062	F098015	MKERSDTLPDRETKSLQMKIDNAQKAGLTETEKGAYLRGWVSLGKARAFVQKGNQGRGFKLS*
Ga0117914_1116168	Ga0117914_11161681	F033867	HRDMVNTGRIGLGNMEYMEQYGIHIQTATRVIADYIASEDKMIAEGKMPTVNHLYAFLDRMAETFHDAHKDVMKRIGIKDLIKEDFLYLEDKDDNS*
Ga0117914_1120159	Ga0117914_11201591	F081217	DDIKSTMSGSSVYTPVSGDDDAWVFAEVAVGNGAATAILDTSDSYLGLAASVSLSDKVKWVTIKNISTTSTEGVAICIDNGNAAYNDSDVMILGNGEMIIMKTPNLTAGDLNVRSCELDSDGKPTAQGTATVTCQVAAILEDV*