3300009393: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159814214 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300009393
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052915 | Ga0111010
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159814214 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 211924859
• Sequencing Scaffolds: 26
• Novel Protein Genes: 28
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	1
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Leptotrichiaceae → Leptotrichia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → unclassified Capnocytophaga → Capnocytophaga sp. CM59	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F081454	Metagenome	114	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F101359	Metagenome	102	N
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111010_1001436	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	12129
Ga0111010_1001531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	11655
Ga0111010_1004139	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	6184
Ga0111010_1004559	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	5810
Ga0111010_1005711	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4984
Ga0111010_1006390	Not Available	4642
Ga0111010_1006879	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4391
Ga0111010_1006950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4363
Ga0111010_1009674	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3434
Ga0111010_1011415	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3048
Ga0111010_1013493	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2682
Ga0111010_1013576	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2669
Ga0111010_1017906	Not Available	2143
Ga0111010_1021082	All Organisms → cellular organisms → Bacteria	1890
Ga0111010_1021581	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1857
Ga0111010_1024609	Not Available	1669
Ga0111010_1027700	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1516
Ga0111010_1030200	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1410
Ga0111010_1032588	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Leptotrichiaceae → Leptotrichia	1325
Ga0111010_1039469	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → unclassified Capnocytophaga → Capnocytophaga sp. CM59	1127
Ga0111010_1044604	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1013
Ga0111010_1048450	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	943
Ga0111010_1053114	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	867
Ga0111010_1064439	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → unclassified Capnocytophaga → Capnocytophaga sp. CM59	729
Ga0111010_1084569	Not Available	567
Ga0111010_1086059	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	556

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111010_1001436	Ga0111010_100143611	F061925	MSWEYSINLDSEEAVSSVVTDLKNCELFSSSTTDYINWKNPESMDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEVTLEHIFRSVI*
Ga0111010_1001531	Ga0111010_10015312	F101359	MKKFLSKRSILVGALALALGFIVSSCSRDKDDDAVYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0111010_1001531	Ga0111010_10015316	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESTISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIINGKKMEVKNVEGNINEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFYMVIPYKQSIPNAGDIEMKMNVKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0111010_1004139	Ga0111010_10041393	F077403	MSAIYAEERISVHFEVRWRREHNPMDTLRRELDVPYLHVVNQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGSALPDHYEGYQLYRGQVRGDSIWIEM*
Ga0111010_1004559	Ga0111010_10045597	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIIQIKKRLDNFQQRETAKSLSKLI*
Ga0111010_1005711	Ga0111010_10057114	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLVSYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFTQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0111010_1006390	Ga0111010_10063901	F070224	MKRLLFLLLTLLHYTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEA
Ga0111010_1006879	Ga0111010_10068794	F042387	MKKIILFFMAVFFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKVVFVYEKDFITSKIRYSQAGEEHGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0111010_1006950	Ga0111010_10069504	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEVRSKGIYE*
Ga0111010_1006950	Ga0111010_10069505	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSKLYNHLNLKK*
Ga0111010_1009674	Ga0111010_10096744	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGDYILLQNLILEDNQLKNQLISFNKNTGKITVLANIKDFFWLDFDSETKTINGYNNKEQIEIAISESIVFY*
Ga0111010_1011415	Ga0111010_10114154	F054111	MVFKNLEKESMNKPLDNITHETFLKLMEHLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ*
Ga0111010_1013493	Ga0111010_10134932	F047127	MKKTFAFILLSIISLAKAQLTDIKYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGNEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNRK*
Ga0111010_1013576	Ga0111010_10135763	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECNDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0111010_1017906	Ga0111010_10179063	F022002	SKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIRAEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFIFDDLDVLEQIESELEDKYGMMIESEGTSKSKSKGFFDAFTTLEVVRNFEYEGHSMFKDAYIAYTDEELDRARSAEKESEI*
Ga0111010_1021082	Ga0111010_10210822	F030786	MKRTKIHKVVFQMLVVMIVTSSLQLLLKNGSAIKGGNTMGTKKISLVDITDGDDPKEGVLKVKYFDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0111010_1021581	Ga0111010_10215811	F064819	IKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLKRNLKDLCECKIRKFFFQNIDEKIEIVFSINDIGAIAIEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIKKYK*
Ga0111010_1024609	Ga0111010_10246093	F022002	AQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIEGTQAGSDDEVYTVTGLKYARRSVFLASLQFYKGHLRRILFAFKDLDVLEQIESDLEEKYETMAEGKETSKTKRKFIFDAFTSLKVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI*
Ga0111010_1027700	Ga0111010_10277002	F041827	MKHFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIVQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYQISADRSYIKEE
Ga0111010_1030200	Ga0111010_10302002	F085821	MDHIFEQLAPLAETKKQQTTIAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLYEYCRALLYTAETTQSQQELVAETQSHIVLLKDLYKKVNKIK*
Ga0111010_1032588	Ga0111010_10325882	F084362	MNCTFTVRWSDEKNKPHTKTYATEADAKRAKKWLLEHGVRDVDIAVKINNKPAGRLKDDKPSETEAEQKGFWWEK*
Ga0111010_1039469	Ga0111010_10394691	F054111	MNKPLESITHKEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMEKTLKIKWDLDYGLFLETEMLSTADRDLFLNILNKEILFLI*
Ga0111010_1044604	Ga0111010_10446041	F058221	TMKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLAQNASFLANKFLLPSLEVGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0111010_1048450	Ga0111010_10484503	F040685	AFTSISLHGQEKIQQVEVHIFGGRALYSSRYTLNSLKKEFSTKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKKLRDGPSQQAFDGEDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE*
Ga0111010_1053114	Ga0111010_10531141	F059076	INAAGKTKQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLQNFLQKLE*
Ga0111010_1064439	Ga0111010_10644392	F054111	MERLKNLQEFTFLEYIMAPEADIFYFNFMKKTVKIKWDLDYGLFLETESLSTADRDLFLNILDKEILFLI*
Ga0111010_1084569	Ga0111010_10845691	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVINTLSELKEVLDQEAIAYQIE
Ga0111010_1086059	Ga0111010_10860591	F030786	MLVVMIVTSSLQLLLKNGSAIKGGNAMGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQS