3300009381: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159551223 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300009381
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053298 | Ga0115415
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159551223 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 172024706
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Leptotrichiaceae → Leptotrichia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Dichelobacter → Dichelobacter nodosus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054110	Metagenome	140	N
F059076	Metagenome	134	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F070224	Metagenome	123	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F092231	Metagenome	107	Y
F097526	Metagenome	104	Y
F101359	Metagenome	102	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115415_1000275	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	46328
Ga0115415_1000308	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43139
Ga0115415_1000456	All Organisms → cellular organisms → Bacteria	33682
Ga0115415_1002587	All Organisms → Viruses	9769
Ga0115415_1004626	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Leptotrichiaceae → Leptotrichia	6234
Ga0115415_1005507	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5363
Ga0115415_1009377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Dichelobacter → Dichelobacter nodosus	3305
Ga0115415_1011507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2730
Ga0115415_1011967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	2627
Ga0115415_1012181	All Organisms → Viruses → Predicted Viral	2577
Ga0115415_1023155	All Organisms → cellular organisms → Bacteria	1329
Ga0115415_1029175	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1028
Ga0115415_1033878	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	872
Ga0115415_1035653	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	822
Ga0115415_1036636	Not Available	798
Ga0115415_1041722	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	691
Ga0115415_1048525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	583
Ga0115415_1048927	Not Available	577

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115415_1000275	Ga0115415_100027514	F045567	VHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0115415_1000308	Ga0115415_100030814	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGIMTFSSREWEQRDDVNHLTTIWMRPSLYDIERKEN*
Ga0115415_1000456	Ga0115415_100045636	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTSITFFAKLVVTAIGFLLAAMTVILYTISAE*
Ga0115415_1002587	Ga0115415_100258710	F105377	MSDFDKLPLLTPEEAFERAWEGGGSAHPVFDRGYRVQGLNAWKAIETLLCRNDVRDITVASFGLKRFEEILDAIAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI*
Ga0115415_1004626	Ga0115415_10046266	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTSGKNVHLVITKDSIIYRLTEVVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQIIDIKFSQLYNHLNLEK*
Ga0115415_1005507	Ga0115415_100550710	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNEVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115415_1005507	Ga0115415_10055079	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEAYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA*
Ga0115415_1009377	Ga0115415_10093772	F097526	MATTIYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAGEMEKAGRNGHPDPAEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMAVLTIAEITETTPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE*
Ga0115415_1011507	Ga0115415_10115075	F063778	MPETISEEAKQELLQKLQDALGLVKNADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED*
Ga0115415_1011967	Ga0115415_10119673	F092231	MIIFPPQEFITWTNTLTQFPWPIQLNDFPPYAEQLGWKPTSRPSEFTVFPDNDYEFTTLSSSETGDVYKLFLYMAVNDLKNDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPREMFAQVTRGRRTVMFRFFTQQGQWYFL*
Ga0115415_1012181	Ga0115415_10121812	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYTAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115415_1012181	Ga0115415_10121813	F074985	MMELTDGGWYKTPLIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKVIHMGSTKRFNIEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLMDHIKAMHID*
Ga0115415_1023155	Ga0115415_10231552	F101359	LSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGISENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0115415_1029175	Ga0115415_10291751	F063777	LYIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLNDDGYIFYKLTDEKSATDLNEVIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIIISE*
Ga0115415_1033878	Ga0115415_10338781	F059076	MTHKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0115415_1035653	Ga0115415_10356531	F018385	GLRGLHPWSLSRISGTETMMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0115415_1036636	Ga0115415_10366362	F054110	VVLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0115415_1041722	Ga0115415_10417221	F047127	MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGQYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0115415_1048525	Ga0115415_10485251	F046431	SVIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSK*
Ga0115415_1048927	Ga0115415_10489271	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLFASPLRPVKTRGSKIRTRDWVKADYSYQNNIIFMGFGDSLVIENQFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVIEHDKKAGRYYKYRI