Sample 3300009373

Overview

Basic Information
IMG/M Taxon OID	3300009373 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118094 \| Gp0127950 \| Ga0118719
Sample Name	Combined Assembly of Gp0127950, Gp0127951
Sequencing Status	Permanent Draft
Sequencing Center	Georgia Genomics Facility
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	861546028
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	N/A	Depth (m)	143
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013484	Metagenome / Metatranscriptome	271	Y
F014123	Metagenome / Metatranscriptome	265	Y
F026198	Metagenome	198	Y
F030981	Metagenome	183	Y
F048391	Metagenome / Metatranscriptome	148	Y
F056324	Metagenome / Metatranscriptome	137	Y
F088317	Metagenome / Metatranscriptome	109	Y
F091390	Metagenome	107	Y
F098740	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F013484

Metagenome / Metatranscriptome

271

F014123

Metagenome / Metatranscriptome

265

F026198

Metagenome

198

F030981

Metagenome

183

F048391

Metagenome / Metatranscriptome

148

F056324

Metagenome / Metatranscriptome

137

F088317

Metagenome / Metatranscriptome

109

F091390

Metagenome

107

F098740

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0118719_1036872	All Organisms → cellular organisms → Bacteria	4062	Open in IMG/M
Ga0118719_1060340	All Organisms → cellular organisms → Bacteria	2669	Open in IMG/M
Ga0118719_1081457	Not Available	2073	Open in IMG/M
Ga0118719_1121505	Not Available	1489	Open in IMG/M
Ga0118719_1128475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1424	Open in IMG/M
Ga0118719_1171701	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1131	Open in IMG/M
Ga0118719_1200980	Not Available	996	Open in IMG/M
Ga0118719_1218438	All Organisms → cellular organisms → Bacteria → Proteobacteria	925	Open in IMG/M
Ga0118719_1260757	All Organisms → cellular organisms → Archaea	776	Open in IMG/M
Ga0118719_1294102	Not Available	643	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0118719_1036872

All Organisms → cellular organisms → Bacteria

4062

Open in IMG/M

Ga0118719_1060340

All Organisms → cellular organisms → Bacteria

2669

Open in IMG/M

Ga0118719_1081457

Not Available

2073

Open in IMG/M

Ga0118719_1121505

Not Available

1489

Open in IMG/M

Ga0118719_1128475

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium

1424

Open in IMG/M

Ga0118719_1171701

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes

1131

Open in IMG/M

Ga0118719_1200980

Not Available

996

Open in IMG/M

Ga0118719_1218438

All Organisms → cellular organisms → Bacteria → Proteobacteria

925

Open in IMG/M

Ga0118719_1260757

All Organisms → cellular organisms → Archaea

776

Open in IMG/M

Ga0118719_1294102

Not Available

643

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0118719_1036872	Ga0118719_10368725	F056324	MKRKAVIIFIIFSFIVAFSGCAASKIYLMDVRYIPEKKAPPTSKTVGICAFEDGRREKEKEIIGLRHRPRKKVDFLKLEGISLSESVTQAVKDYFAEKGFEVTDCKGWDQSAEGLERLPNDLFLVVRGKIDSFKVEAKSGISITDTRYSVKMHAFIGQAEKRKMVTCTIESTPRTEKMGFDPEEVKARLNDVLTEVIRKLFEGKY*
Ga0118719_1060340	Ga0118719_10603403	F048391	MSTEESHEEINSVISVDYLEKLVNEGYEIQGPRNDPSKDLTSFKIFLKKRREFVREDWLSDNGYQFVEPSTFTNGRRIAYKMIEGFPDERFKSNYSLRKGDQEIPLYLKVEFKVPQE*
Ga0118719_1081457	Ga0118719_10814571	F013484	QTLVETLNRFLSLHPANGDEDAALRLVMELLELADVAPQAEIARAVGYSQARSLRTYKQRLEEEGLGGLFDRPITGRPAVTSHLAVERAVVQAVLEAVITEHVLPDDEALAQAVNGFLAEAQSPWAGQVTASMVETIRLRLEIQRPILAQQLQAANDSQPSAQEQVRLGRTKAGGAFILAVLLVETGWLKLAELLPMAPGYAVTAVQWLLTAIFAVIYDVRRAFHLDDVRDIGFALITGRARPLSHSTFQHLLHAIPAEAARRFYEATARWIVRGLGAGVRRISLDGHNLPRYTKVVDVIKGKIGNTGRILKAEEMVLAFDLDAWLWLALRVYQGTKKLSQALLEMVAELRRHREGIEGLWRIFFDKGGYKGQNFQALSALPDVHFYTPAVRYPTNVEQWEQLEEGDFDPDPFVFDKHADLPAQEQLTYRLADMTMTVNIREKNRVVGTVELRAIVIHDPKGQTPAEQWPLVVLTDDYQIDARELANEFGDHWGQEFGHRIGKHDLCLDIVPPGYRLTSRRDENGQLQREVEYDSTAFFLSSWLRCLVFNLMSLFAKRLGGEYARMWAGTLLRKFIRRPATLYLIGNELHVVFDPFQNQDDLRPLLDELNAKRVQLPWLNGLVVQFSIEEDEPLHPLAEPEKRNRLFGDG*
Ga0118719_1121505	Ga0118719_11215053	F014123	MPRWIAIGTAPGWDDIKKFGEELHEPHNWHPDARTTIKTVFALSDGRLLAECHARSQEDFDAWLQQKGWTVESVTPIKHVANVGSIWEIR*
Ga0118719_1128475	Ga0118719_11284751	F088317	MPGPEDKVKYPEAETFTQEQVSGYRPMKRRDLWYGEHDAPPLPPLDKSQLVKWIDSGGKEEEEARYVMMPPPELPYRKLPVSTKFISCNTRHLKEIGAFRTILPEKFGDAGYKAVDDCYASFAYAEFRAAQKRGQLKNAPNCSATEIGAFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIYCPYDVRRGDYRLCAATAAYERELVKLCNPKLY
Ga0118719_1171701	Ga0118719_11717011	F098740	MNMRKTCLLCVGGFTTLVVVWLSGLLLQTGHAGPAAGVGSVYATNVQQETGRHRRPVSLRMLAHVLHDCEQKSKPIHPGVVRWASRALPTEEVQKVS
Ga0118719_1200980	Ga0118719_12009802	F030981	MGKVRRCDKRCHNARRPRCRCWCGGFFHGSAGTANRAVLSGDTTAFLKEHGFKEGETAYIEQKKLPVEVS*
Ga0118719_1218438	Ga0118719_12184382	F014123	MPRWIAIGTAPGWDDIKKLGDEMQATRNWRPDARTTIKTVHVLADGRLLAECHGPKQEDFEAWLQQKGWTVESITPIQLVANVGSIWEIK*
Ga0118719_1260757	Ga0118719_12607571	F026198	MDIEIAILVAGVLIMVGGIVGGGAIYSGLEKIAEA
Ga0118719_1294102	Ga0118719_12941021	F091390	MSTKSTTIRINSSTKEKLENLDFVRKHTFDKILCELIDFYDKNKKGGKK*

Scaffold ID

Protein ID

Family

Sequence

Ga0118719_1036872

Ga0118719_10368725

F056324

MKRKAVIIFIIFSFIVAFSGCAASKIYLMDVRYIPEKKAPPTSKTVGICAFEDGRREKEKEIIGLRHRPRKKVDFLKLEGISLSESVTQAVKDYFAEKGFEVTDCKGWDQSAEGLERLPNDLFLVVRGKIDSFKVEAKSGISITDTRYSVKMHAFIGQAEKRKMVTCTIESTPRTEKMGFDPEEVKARLNDVLTEVIRKLFEGKY*

Ga0118719_1060340

Ga0118719_10603403

F048391

MSTEESHEEINSVISVDYLEKLVNEGYEIQGPRNDPSKDLTSFKIFLKKRREFVREDWLSDNGYQFVEPSTFTNGRRIAYKMIEGFPDERFKSNYSLRKGDQEIPLYLKVEFKVPQE*

Ga0118719_1081457

Ga0118719_10814571

F013484

QTLVETLNRFLSLHPANGDEDAALRLVMELLELADVAPQAEIARAVGYSQARSLRTYKQRLEEEGLGGLFDRPITGRPAVTSHLAVERAVVQAVLEAVITEHVLPDDEALAQAVNGFLAEAQSPWAGQVTASMVETIRLRLEIQRPILAQQLQAANDSQPSAQEQVRLGRTKAGGAFILAVLLVETGWLKLAELLPMAPGYAVTAVQWLLTAIFAVIYDVRRAFHLDDVRDIGFALITGRARPLSHSTFQHLLHAIPAEAARRFYEATARWIVRGLGAGVRRISLDGHNLPRYTKVVDVIKGKIGNTGRILKAEEMVLAFDLDAWLWLALRVYQGTKKLSQALLEMVAELRRHREGIEGLWRIFFDKGGYKGQNFQALSALPDVHFYTPAVRYPTNVEQWEQLEEGDFDPDPFVFDKHADLPAQEQLTYRLADMTMTVNIREKNRVVGTVELRAIVIHDPKGQTPAEQWPLVVLTDDYQIDARELANEFGDHWGQEFGHRIGKHDLCLDIVPPGYRLTSRRDENGQLQREVEYDSTAFFLSSWLRCLVFNLMSLFAKRLGGEYARMWAGTLLRKFIRRPATLYLIGNELHVVFDPFQNQDDLRPLLDELNAKRVQLPWLNGLVVQFSIEEDEPLHPLAEPEKRNRLFGDG*

Ga0118719_1121505

Ga0118719_11215053

F014123

MPRWIAIGTAPGWDDIKKFGEELHEPHNWHPDARTTIKTVFALSDGRLLAECHARSQEDFDAWLQQKGWTVESVTPIKHVANVGSIWEIR*

Ga0118719_1128475

Ga0118719_11284751

F088317

MPGPEDKVKYPEAETFTQEQVSGYRPMKRRDLWYGEHDAPPLPPLDKSQLVKWIDSGGKEEEEARYVMMPPPELPYRKLPVSTKFISCNTRHLKEIGAFRTILPEKFGDAGYKAVDDCYASFAYAEFRAAQKRGQLKNAPNCSATEIGAFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIYCPYDVRRGDYRLCAATAAYERELVKLCNPKLY

Ga0118719_1171701

Ga0118719_11717011

F098740

MNMRKTCLLCVGGFTTLVVVWLSGLLLQTGHAGPAAGVGSVYATNVQQETGRHRRPVSLRMLAHVLHDCEQKSKPIHPGVVRWASRALPTEEVQKVS

Ga0118719_1200980

Ga0118719_12009802

F030981

MGKVRRCDKRCHNARRPRCRCWCGGFFHGSAGTANRAVLSGDTTAFLKEHGFKEGETAYIEQKKLPVEVS*

Ga0118719_1218438

Ga0118719_12184382

F014123

MPRWIAIGTAPGWDDIKKLGDEMQATRNWRPDARTTIKTVHVLADGRLLAECHGPKQEDFEAWLQQKGWTVESITPIQLVANVGSIWEIK*

Ga0118719_1260757

Ga0118719_12607571

F026198

MDIEIAILVAGVLIMVGGIVGGGAIYSGLEKIAEA

Ga0118719_1294102

Ga0118719_12941021

F091390

MSTKSTTIRINSSTKEKLENLDFVRKHTFDKILCELIDFYDKNKKGGKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009373: Combined Assembly of Gp0127950, Gp0127951

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences