3300009363: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765013792 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300009363
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053252 | Ga0115223
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765013792 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 164456726
• Sequencing Scaffolds: 26
• Novel Protein Genes: 30
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F090516	Metagenome	108	N
F097490	Metagenome	104	N
F101359	Metagenome	102	N
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115223_1000970	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	20199
Ga0115223_1001247	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	17521
Ga0115223_1001260	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	17410
Ga0115223_1001551	All Organisms → cellular organisms → Bacteria	15064
Ga0115223_1002059	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	12168
Ga0115223_1002926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9142
Ga0115223_1003028	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8898
Ga0115223_1003275	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	8360
Ga0115223_1004142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6732
Ga0115223_1004998	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5748
Ga0115223_1005204	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5539
Ga0115223_1005677	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5116
Ga0115223_1005823	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4999
Ga0115223_1006506	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4473
Ga0115223_1008622	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3398
Ga0115223_1009335	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3160
Ga0115223_1012779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2282
Ga0115223_1013164	Not Available	2210
Ga0115223_1015932	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1824
Ga0115223_1019163	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1494
Ga0115223_1020966	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1355
Ga0115223_1021355	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1327
Ga0115223_1025538	Not Available	1094
Ga0115223_1033232	Not Available	826
Ga0115223_1039048	Not Available	699
Ga0115223_1039553	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	690

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115223_1000970	Ga0115223_100097021	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMLLLYIQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRIIFG*
Ga0115223_1000970	Ga0115223_10009704	F030786	MKRTRIHKVVFQMLVVMIVTGSLQLLLKNGSTVKGGSATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0115223_1001247	Ga0115223_100124712	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQRQSFTDSYKETVK*
Ga0115223_1001247	Ga0115223_10012472	F047127	MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAMRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*
Ga0115223_1001260	Ga0115223_10012608	F051213	MNLYKILGALILALSFVFTSCDWVSNEPTIEGDRFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLSNSNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK*
Ga0115223_1001551	Ga0115223_10015514	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPERILNLRRQRHERHVILRVFINGSTYNIDPSIDIGLASTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRELFRGNPKEFYTAIDKWLADTRAHQSS*
Ga0115223_1002059	Ga0115223_100205910	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS*
Ga0115223_1002926	Ga0115223_10029269	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWENPKSIDDIPYDARFYTDNKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0115223_1003028	Ga0115223_10030283	F043990	MIKKLGIIFIFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGIPKQFLNIANGYYKYIGDENDDRDFGILIVDTTRKEICIYYQIL*
Ga0115223_1003275	Ga0115223_10032754	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTEIMVSEEDLDIERSDLEDLIRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTITVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK*
Ga0115223_1004142	Ga0115223_10041422	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCVKSNEYLDDDYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFDKNTGKITVLTDIKNFFWLDFDSETKIINGYNNKEQIEIAISE*
Ga0115223_1004998	Ga0115223_10049984	F061927	MKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDDRIEKAISRCIGE*
Ga0115223_1005204	Ga0115223_10052046	F057446	MNSISFGKTTITSYPEYFEIADNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0115223_1005677	Ga0115223_10056772	F051212	MKKFFFIFVLYWLHSCNGTEKANTNTIKTSISEKQNAEKIERIIYSQTGGDTGGNGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTDIQNNKTWDYITKQIIDIKYSQLYNHLNLEK*
Ga0115223_1005677	Ga0115223_10056773	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLKDGPSQQAFDGQDKVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0115223_1005823	Ga0115223_10058232	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAEKNKVISKRFEYQNDNELKEIIDERSGEKVVFVYEKDFITSKIRYSQAGEELGKTNYEYNNGKLLSVIDEAVISDSGIQYKRVVTREYRYNGSEVSVNENVKYHSESYAYNLKDENSTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQIVTTMVYEYNK*
Ga0115223_1006506	Ga0115223_10065064	F070224	MKRLLFLLTLLHCTAWSQVYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENGFVYKADRYPNAKEYELYYKGAGEEITKEDFDSIKFTRMPTALREIKKYKLPRARRTTGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYDHPEAHMIH*
Ga0115223_1006506	Ga0115223_10065065	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSGQNNLIVRKVGGSLIIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFARMPTALREIKKYKLPRTRRTLGEVDRWQHLHLFVVEHDKKAGRYYKYRIALVIYMDYHHPEAYHPGICIIH*
Ga0115223_1008622	Ga0115223_10086222	F080165	MKSIKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQSLQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0115223_1009335	Ga0115223_10093352	F054111	MNKSLESITHKEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETKALSTSDRDLFLNILDKVILFLI*
Ga0115223_1012779	Ga0115223_10127791	F063778	ETISEGAKQQLLQQLQDALGLVKDADTSTHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED*
Ga0115223_1013164	Ga0115223_10131642	F077403	MKITMPIYRGLPLAILLLSAVRAIHAEERVSVHFEVRWHRERNLMDTLRRELDVPYLHVVYQNHTDTAYYLARQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELRSYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0115223_1015932	Ga0115223_10159322	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLENDAETSDYYKEHELYSQAKGYRWLDPNSDYYEDVLAWEALNKLATEIYFHLEDKLDVKLDIEPIPAEEKVTPTQEHLAKFLVFCGVEQDIIDENKERLLKALEEYTPDEYESVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0115223_1019163	Ga0115223_10191632	F059076	MTNKILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSATFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLTQNGSNWEIHADYPNIGPYEFPSGSTSAGQLVNGKWIITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTT
Ga0115223_1020966	Ga0115223_10209663	F097490	MFLKTQKMNIFCKIILPLLCIISCSERKEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0115223_1021355	Ga0115223_10213552	F041827	MKHFLSALALGCLLLSCNRDLENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIVQTIEYYNTKNALRNIKGFPALVVEFYIRPITYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISA
Ga0115223_1025538	Ga0115223_10255381	F022002	ISGFTLGVTTPAEARAIIQRQGGKIILEDGIHAGSNDVSYIVSGLNYARRPTQTVDMFFYKGHLRRIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI*
Ga0115223_1033232	Ga0115223_10332321	F022002	SMEPIHRSIRGCTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFTFDDLEIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0115223_1039048	Ga0115223_10390482	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRCTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDNYYDNPTTYIRSAHDNQELKDVIHLLILAGGNEIPSNHYGILRDA*
Ga0115223_1039553	Ga0115223_10395532	F101360	MSKEDALRRAAIAAHVAKVASQEKKRALSELKEVMPPGDTSRPMIDGMQVGTISVSAPTPKYQVVDEKALVTWLEWNKPEAVHKVPAPWFTAPASLDGFIKQTGEVPDGVELVQGEPRISVRVSGAQEENLRDLISTGDISLIEIEGGDA*