Sample 3300009361

Overview

Basic Information
IMG/M Taxon OID	3300009361 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118143 \| Gp0131536 \| Ga0116590
Sample Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3 SPAdes
Sequencing Status	Permanent Draft
Sequencing Center	University of Liverpool
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	99039447
Sequencing Scaffolds	9
Novel Protein Genes	10
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F006143	Metagenome	380	Y
F013592	Metagenome	270	Y
F023115	Metagenome / Metatranscriptome	211	Y
F025033	Metagenome	203	N
F034185	Metagenome / Metatranscriptome	175	Y
F043408	Metagenome	156	N
F051104	Metagenome / Metatranscriptome	144	Y
F063747	Metagenome / Metatranscriptome	129	Y
F088833	Metagenome	109	N

Family

Category

Number of Sequences

3D Structure?

F006143

Metagenome

380

F013592

Metagenome

270

F023115

Metagenome / Metatranscriptome

211

F025033

Metagenome

203

F034185

Metagenome / Metatranscriptome

175

F043408

Metagenome

156

F051104

Metagenome / Metatranscriptome

144

F063747

Metagenome / Metatranscriptome

129

F088833

Metagenome

109

Scaffold	Taxonomy	Length	IMG/M Link
Ga0116590_1000965	All Organisms → Viruses	3065	Open in IMG/M
Ga0116590_1000968	Not Available	3062	Open in IMG/M
Ga0116590_1001026	Not Available	2961	Open in IMG/M
Ga0116590_1002237	Not Available	2005	Open in IMG/M
Ga0116590_1002361	All Organisms → cellular organisms → Bacteria	1956	Open in IMG/M
Ga0116590_1016426	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	855	Open in IMG/M
Ga0116590_1021318	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	770	Open in IMG/M
Ga0116590_1053328	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	526	Open in IMG/M
Ga0116590_1059139	Not Available	501	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0116590_1000965

All Organisms → Viruses

3065

Open in IMG/M

Ga0116590_1000968

Not Available

3062

Open in IMG/M

Ga0116590_1001026

Not Available

2961

Open in IMG/M

Ga0116590_1002237

Not Available

2005

Open in IMG/M

Ga0116590_1002361

All Organisms → cellular organisms → Bacteria

1956

Open in IMG/M

Ga0116590_1016426

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

855

Open in IMG/M

Ga0116590_1021318

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

770

Open in IMG/M

Ga0116590_1053328

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

526

Open in IMG/M

Ga0116590_1059139

Not Available

501

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0116590_1000965	Ga0116590_10009651	F088833	LMARAEKKEEKETSLESLMKFNVFLSIATLVTVAGATVADYILMAWTWI*
Ga0116590_1000968	Ga0116590_10009688	F006143	MSDEENPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAW
Ga0116590_1001026	Ga0116590_10010261	F043408	LGETMKVRKEVSLTVETAQIANKMNNFSQWVRIGLRQYQHGEDVASETMRRMRWAKAAHMLASTLLEHALEIDPDYKGDVQTIIAKAMNQTTLEEFE*
Ga0116590_1001026	Ga0116590_10010264	F013592	MRIDMSLAPELVWLEEVLFEDSVIPLSTLAKFHPLVRIPVIGFQAADIVGTELAIRTIEAGGVGALELFTPEIRRYEQTALVGMGGMRI*
Ga0116590_1002237	Ga0116590_10022373	F063747	MKRTLRDAFDRWKDALIEQDKQITRAARHRAHARVTSMEDLIAETPADDIEGVGIKLALYVYMSGVDP
Ga0116590_1002361	Ga0116590_10023613	F051104	LFELRIAEAIEEEAVLSQNLIEEGFNHAFKAGELLQEVKSMLSSEEELEQWLQENCSKVEKGVASSCLRLFNGETVKVEATLKREENHKRERG*
Ga0116590_1016426	Ga0116590_10164262	F023115	MAINVSALSDFNNEVAGELLIRSVYEGATMDYITIKEGVKHQEPLNLFDVDLQVQSGTCVSTPSGSMIASQRDITVTPRTSFDGLCLKDLDTKYLGISALGAGSYNETFALANAYGDMLVNQFAKSND
Ga0116590_1021318	Ga0116590_10213182	F006143	MEEELEQKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSISTLVTVAGATVAEYILMAWTWL*
Ga0116590_1053328	Ga0116590_10533282	F025033	WTKVEGGRRMNRRIKRNRAVPIHITLAPGLLDEIDARLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLVNILRNRHNYDGPAEAILKSLLEVLSE*
Ga0116590_1059139	Ga0116590_10591392	F034185	MSHDLLSYKEARIEALLQEINRLELENEKLTTYVFELCDKDCPDEYKKILKVDVFKG*

Scaffold ID

Protein ID

Family

Sequence

Ga0116590_1000965

Ga0116590_10009651

F088833

LMARAEKKEEKETSLESLMKFNVFLSIATLVTVAGATVADYILMAWTWI*

Ga0116590_1000968

Ga0116590_10009688

F006143

MSDEENPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAW

Ga0116590_1001026

Ga0116590_10010261

F043408

LGETMKVRKEVSLTVETAQIANKMNNFSQWVRIGLRQYQHGEDVASETMRRMRWAKAAHMLASTLLEHALEIDPDYKGDVQTIIAKAMNQTTLEEFE*

Ga0116590_1001026

Ga0116590_10010264

F013592

MRIDMSLAPELVWLEEVLFEDSVIPLSTLAKFHPLVRIPVIGFQAADIVGTELAIRTIEAGGVGALELFTPEIRRYEQTALVGMGGMRI*

Ga0116590_1002237

Ga0116590_10022373

F063747

MKRTLRDAFDRWKDALIEQDKQITRAARHRAHARVTSMEDLIAETPADDIEGVGIKLALYVYMSGVDP

Ga0116590_1002361

Ga0116590_10023613

F051104

LFELRIAEAIEEEAVLSQNLIEEGFNHAFKAGELLQEVKSMLSSEEELEQWLQENCSKVEKGVASSCLRLFNGETVKVEATLKREENHKRERG*

Ga0116590_1016426

Ga0116590_10164262

F023115

MAINVSALSDFNNEVAGELLIRSVYEGATMDYITIKEGVKHQEPLNLFDVDLQVQSGTCVSTPSGSMIASQRDITVTPRTSFDGLCLKDLDTKYLGISALGAGSYNETFALANAYGDMLVNQFAKSND

Ga0116590_1021318

Ga0116590_10213182

F006143

MEEELEQKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSISTLVTVAGATVAEYILMAWTWL*

Ga0116590_1053328

Ga0116590_10533282

F025033

WTKVEGGRRMNRRIKRNRAVPIHITLAPGLLDEIDARLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLVNILRNRHNYDGPAEAILKSLLEVLSE*

Ga0116590_1059139

Ga0116590_10591392

F034185

MSHDLLSYKEARIEALLQEINRLELENEKLTTYVFELCDKDCPDEYKKILKVDVFKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009361: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3 SPAdes

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences