3300009350: Microbial communities of water from the North Atlantic ocean - ACM35

Overview

Basic Information

• IMG/M Taxon OID: 3300009350
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126421 | Ga0103832
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM35
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48631543
• Sequencing Scaffolds: 20
• Novel Protein Genes: 26
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar	1
Not Available	10
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000070	Metagenome / Metatranscriptome	2710	N
F000491	Metatranscriptome	1079	Y
F002457	Metagenome / Metatranscriptome	557	Y
F002556	Metagenome / Metatranscriptome	548	Y
F003081	Metagenome / Metatranscriptome	508	Y
F003808	Metatranscriptome	467	Y
F005505	Metagenome / Metatranscriptome	398	Y
F006501	Metagenome / Metatranscriptome	371	N
F009426	Metagenome / Metatranscriptome	318	Y
F011139	Metagenome / Metatranscriptome	294	Y
F014625	Metatranscriptome	261	Y
F018667	Metatranscriptome	233	Y
F019484	Metagenome / Metatranscriptome	229	Y
F020014	Metagenome / Metatranscriptome	226	Y
F023858	Metatranscriptome	208	Y
F024323	Metagenome / Metatranscriptome	206	Y
F035177	Metatranscriptome	172	Y
F040511	Metatranscriptome	161	Y
F040635	Metagenome / Metatranscriptome	161	Y
F047469	Metatranscriptome	149	Y
F048725	Metatranscriptome	147	Y
F071939	Metatranscriptome	121	N
F074356	Metatranscriptome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103832_1000289	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1481
Ga0103832_1000373	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1357
Ga0103832_1000489	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1230
Ga0103832_1000528	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1202
Ga0103832_1000559	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1178
Ga0103832_1000737	All Organisms → cellular organisms → Eukaryota → Sar	1087
Ga0103832_1000827	Not Available	1044
Ga0103832_1001365	Not Available	872
Ga0103832_1001539	Not Available	840
Ga0103832_1001960	Not Available	770
Ga0103832_1002042	Not Available	760
Ga0103832_1002893	Not Available	672
Ga0103832_1003436	Not Available	632
Ga0103832_1004091	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	595
Ga0103832_1005136	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	550
Ga0103832_1005139	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	550
Ga0103832_1005224	Not Available	547
Ga0103832_1005804	All Organisms → cellular organisms → Eukaryota	527
Ga0103832_1005863	Not Available	525
Ga0103832_1006330	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103832_1000289	Ga0103832_10002892	F005505	LDEIRFYGVAPH*YFRPYMGILVISPTHYEGLMRMGLFLGSLACLPLIYNVYNTFNKYVSTIPMQNSILQTTTFTLFMMSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLC*LLHHLDLIDHYIFQFSQTFLRKINPNLLKSASGKKTNY*
Ga0103832_1000289	Ga0103832_10002893	F003081	MPEPGLVIELREEMFNDTRFGSEVFYMHVRGVDTLMLLSYIHILKKIFLKNYVTAESDG*
Ga0103832_1000373	Ga0103832_10003732	F003808	MSPAVEEPGLSLFCFAVYTKNTGSPKPSQELELFRMQRENSWSLFSCAEWAVYSDVVEDLGGGVKTIEVRDVKGDFNILKRKETGCWVNTGMFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTSIPWKDGVLGGKYGPMGEDLFAQKCMDMLGVGRQENWMLTTDGACQADRPEEEKHNKKYVPPCEGVSTPTIHPYKKPEMYRTCWQQAVDA*
Ga0103832_1000489	Ga0103832_10004891	F018667	MEISRTANTDVDEMSDSLVMQTEVPRSHSTQKLLGAMAASLLVGAFAGSRLAYHEQPLVSASGDLQELAQIIAKPKRGECSSVKEDCASTGCCDIVGYTCFQTKPGAAKCMKTCTPSATQLCTQPQSIMEPVLQDAVPVGTSMYCFEVYTKDTGTTKKSEELETIQYQYSKGLSIFACDAQDVFADVEVEVGPGLSTISVVDAENDFHFAKRKETGAWVNTGMFTQVWRAIAIGGKYQSADWVVKVDADAVFVPSRLRSKLGAQLVPPSGIYLENCKYVEYGYFGNLEVFSQAAWSTLVDKIDDCKADSQINWKVGVHDGKYGPMGEDLFAQACLDKFGVRRVEAFDITTDGACPADRPIDQQKNKKWKPTCAWTATPAMHPFKKVADWIQCHDATV
Ga0103832_1000528	Ga0103832_10005282	F011139	MGLFLGSLAFLPLIYNAYNSFNRYVSTIPMQNSILQTTMFILFMLSLFCANSMLPCGRYYYEPEGGYVGNP*
Ga0103832_1000559	Ga0103832_10005591	F003808	MKKVVASPGGSLFCFSCYTANTGSEKPSHELELLQMQHENAWNIFSCAEWAVYSDVVAPLGGGDMTIKVDDVKGDFHFAKRKEAKTWINTGMFVQIWTALRDAGHATNHDWVIKADADAVFFPWKLVDALRSATVPVEGLYMENCKFVEWGYFGNLEVFSKQAFTTLVNNLDTCYTSLPWKVGVHGGKHGPMGEDLFAQKCMDLMGVAKQENFGLTTDGACEADRPEGQKKNKKFVPTCAGVSTPSIHPFKKPEAYRECWAQAASVQP*
Ga0103832_1000737	Ga0103832_10007372	F040635	VRHEDIPETNNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKER
Ga0103832_1000827	Ga0103832_10008272	F074356	FSPKMAPQCEFGEDVFGAYEAIIGETVIGLWVMSTWSWRITLEIPSFRSGKAKNLVQEYALYAKQLGYDPITFATIVGWMNGIVAAGLVWAIVNPNFQLQSTCGGVMLLLTGFSIYCRRAVGDGWEKCYDAIVLFLMALAITVSSATALSKGCYAYAINGVDHGFRLSCGYTVVSAIVFWGIKSLQAGDLTEWEKFLDAEDEAPAEPTLGEFFFGASKKTDQEEALLA*
Ga0103832_1001365	Ga0103832_10013651	F006501	KIASDDIKARLDAIKECEQKSREQDKGVQEDIARKVHAVRVIHSDCRDKELGLTKDANEKCQFLDFLTEPAALPKESADKKTKLAYGETMMGYWCNKDEQFKACAAATDALEPVVKECNKKQTQFESEFCAMAIVYHAQCQDLNDVCYTETRAAYDSSVASTSKLLGKWKIEYQALKKINCFLDVWMENGDANTVSSEKLAACKATEADASILNIDFGTPVKEFVCADAGFGTLPDYPGTPDFVTKEYGAWPDLVQDVIHCHIEDPVAVSTTLGANHPDWEHGDHSDPFA
Ga0103832_1001539	Ga0103832_10015391	F000491	GAKEAAEPGSSKAKRELYGFLALSFGDVDTDKDGLINAEQFDQLLAEVAALPRRYGLAPLDVGDAVSRAVNHKILFDTLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVRGMIELQKAGKGWRENH*
Ga0103832_1001960	Ga0103832_10019601	F035177	PHLAQAWTAESSGDGLPGQVGSESYYVSADKKFKAHKFEYPEQSCTKISLHDPTQLHHIAGGERNYYVGCDSVNCCYSDFQMKSWDIEKSGLFNKVEFVGYEDTTELNDNPVTGAEHWRQATKIPFANVSVGYDYFLHRTDAGDVISHRIDYTADGAQIPGGSILYGDFEVQHDIDTFKQVFTPPAECLKSNVLKCPNQKVSSWEAQFFTRDMASMLV*
Ga0103832_1002042	Ga0103832_10020421	F002556	HLITKVATIDIHADVDYYHIEQYGEHQYLTHLEEAVTNPNSRAHASLYEFLLAIFTECDTRSTGVLTFAEFDQLLSRAAEVPRTFGLAPPEASKETRKKFFDSMEDKQMGGVTFRLLLAWTIEHSKGKIAAQKAGKGYKK*
Ga0103832_1002893	Ga0103832_10028931	F019484	IFYFLTILGGSLKKIAKKITISVPISKRVYTNASIF*
Ga0103832_1003436	Ga0103832_10034362	F040511	MFAGSKSNPYNGAAYLYNADETKCCKTQPKGFGAEKLSVAQGNFYNTLEYVDERDFNGVYYQGKAKYYKLTGVNEPVREFWYFTDQDGKPVQQGEAGTGPTDQGYPTSIGHTIWHDYDQSTFDTSAIDSSVFAVPEACKTTTLKCNFP*
Ga0103832_1004091	Ga0103832_10040911	F003081	ELREEMFNDTRYGAEVYYMHVRGVDTLMVLSYVHILKKIFLKNYVTAESDG*
Ga0103832_1004379	Ga0103832_10043791	F047469	KTMKASAMKAMKAKTMKASAMKAMKVSVIAKGPRAKAVVFLGLGNKSKTLSGLKKSDLMKSKSGKIVSKALSARGKQLFAQSALKKWSVALQQARKELGITGFCAVNGKTPQGKALYAKVKAILGK*
Ga0103832_1005136	Ga0103832_10051361	F014625	QLNDLYHDMDDKRKIEKDLHELVKEWDVLNEVARTDPDLARAHRDGHCHEAVMWYSHHLPEGMKKLLKDKISLPLLSSMKHSMKDVEHGPRVHRAYEEKVTCASCHSFEYPSATVV*
Ga0103832_1005139	Ga0103832_10051391	F024323	MDVLESSWFLVSSLIIGIVLLVDPKSSLTGSNTNAVLGLFSSPSSGQQFIYNFSAIPILSFFLLTIVLSLNN*
Ga0103832_1005177	Ga0103832_10051771	F002457	QFTDWATTHIAGKIAEIDTSSEVDFYHVSNYSEAEFLKAIEVAVTNKNSREYASLYEFLLTAFVETDATCRGEITYAEFNKLIERAAAVPRTFGLAPPDGTVEARKAIFESMDDTKTGLITFRKFLEWTVTHTAGKVEAHKAGKGYKK*
Ga0103832_1005194	Ga0103832_10051941	F071939	WTSMWEPHLIHYEPKKVLIKEWVTSDSFADDISSVFYEVDRDGNHMLEWNNGEIRNFINKVYQMKGLATPCESTMYDMYRIFDEDNNGGLDAVEAQHLAQAHVMSLVTALHL*
Ga0103832_1005224	Ga0103832_10052241	F023858	YVKLNGPNCCYCDNVDKPKMWDIADSGLFTKVGFVAYEDTTELNDNPVKGAEHWATSSVLPKVLTVTYDYFLHREDNGDVVSHRINFNTSVEQSGEILYGNFAVQHDLDAHRERFAVPQECKGNILSCCDDMDKVDAKWFRHDFAVRQAEKTVV*
Ga0103832_1005343	Ga0103832_10053431	F000070	KQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDATRKLEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGVVKFAQVVGVFPGPRFDDAEGVDQSEADVELLGWEECAENMSFRVDKAWRQRCSQRF
Ga0103832_1005804	Ga0103832_10058041	F020014	FCPFYRDEPNPEYAPKKKSVNKPRAARPPIVATIQRGIRPISLISIIIKD*
Ga0103832_1005863	Ga0103832_10058631	F023858	DSPKQWDIPKSGLFTKVKFNGFEDTTELNDNPVQGAEHWFTNSVLPKVLTVSYDYFLHREDSGDVISHRINFNTSVGQEGSILYGGFQVAHDLDAHRAKFDVPQQCKGNILDCCDNREETMATWFKHDHAVEQATKAEVAV*
Ga0103832_1006307	Ga0103832_10063071	F048725	LDDTMATCTQKANDFEARQQLRAEEIQAIEKAIEIISRNAVSGAAGKHLPSMIQQKTTSLAQFRSGSSSPSQFKVAIYLQDKARQLNSRILSALADRVEKDPFKKVKKMIKDLIVKLMEEANEEVEHKGYCDKELATNEHTRKEKTEAVVMLTAEIDELTASIAALTEQI
Ga0103832_1006330	Ga0103832_10063301	F009426	ESFSTAAKVNKNVKLLLNMTLDEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*