3300009346: Microbial communities of water from the North Atlantic ocean - ACM14

Overview

Basic Information

• IMG/M Taxon OID: 3300009346
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126428 | Ga0103839
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM14
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48730475
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002457	Metagenome / Metatranscriptome	557	Y
F004358	Metagenome / Metatranscriptome	442	Y
F005505	Metagenome / Metatranscriptome	398	Y
F005911	Metagenome / Metatranscriptome	386	Y
F006548	Metatranscriptome	370	Y
F018020	Metagenome / Metatranscriptome	237	Y
F020014	Metagenome / Metatranscriptome	226	Y
F020468	Metagenome / Metatranscriptome	224	Y
F028825	Metagenome / Metatranscriptome	190	N
F031118	Metagenome / Metatranscriptome	183	N
F042640	Metagenome / Metatranscriptome	158	N
F047358	Metagenome / Metatranscriptome	150	N
F063725	Metagenome / Metatranscriptome	129	N
F064686	Metagenome / Metatranscriptome	128	Y
F065416	Metagenome / Metatranscriptome	127	Y
F083374	Metagenome / Metatranscriptome	113	Y
F086309	Metagenome / Metatranscriptome	111	Y
F093788	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103839_1002833	Not Available	967
Ga0103839_1004531	All Organisms → cellular organisms → Eukaryota	803
Ga0103839_1004673	Not Available	794
Ga0103839_1005148	Not Available	763
Ga0103839_1005626	All Organisms → cellular organisms → Bacteria	735
Ga0103839_1006141	Not Available	709
Ga0103839_1007708	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	646
Ga0103839_1008240	Not Available	629
Ga0103839_1008264	All Organisms → cellular organisms → Eukaryota	629
Ga0103839_1008869	Not Available	610
Ga0103839_1010208	Not Available	576
Ga0103839_1012136	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	540
Ga0103839_1012709	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	530
Ga0103839_1014014	Not Available	510
Ga0103839_1014099	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103839_1002047	Ga0103839_10020472	F028825	MSNTPLQGALESFTKLTDTLQECIKSHDIEGAMTLAKERHDALVNLLEDANIDQTQRANCADTTLGHLLKEQLLAKSNSDQNRSDFIARKSAYRAYALKAA*
Ga0103839_1002833	Ga0103839_10028331	F047358	MNKKYIIIGAVVAAIALFTMCGKCEAQEVVKEKNWELNTEVGYYEKRISGGLYGAQDSAYVKASTKLGNFQGLAFVGSLEYVNTEDYQLHGTIGTYLNTVVGGIDTRLVVHTGENADTTFELNGAYDLNWFEFVDTSVTVAFEDGSEAGTSTDSIITTPAFNVSKTFDAKYVDITVGGEYGQSFGYDEDFEYLHGYVRVKSTINNVIPVFVQFNALKNDLGIVNDISSEGTDGDFDTSVTVGLAYSF*
Ga0103839_1004531	Ga0103839_10045312	F018020	MTEKVAMILSGYSSLILEMRRVPIPDPVPPPREWVT*
Ga0103839_1004673	Ga0103839_10046732	F064686	MKNKITHEEYQKMWFALNDGIITEDEWRVFCDALFAQTLEENKDVMVRLKNR*
Ga0103839_1005139	Ga0103839_10051392	F083374	ASTLDDGTAPEDFDVDAPASGEGAIGAQSKQMYEELSGWIGEMDRFSQYLNGTTDSIQTSLNAAEPDTIFDSISNAETKKIARVAMEISSLSEILKGYLAGANDPKYKFN*
Ga0103839_1005148	Ga0103839_10051481	F005911	KKGETMCLKDRLLQMLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGSKTEDDIEAPIDDVFHNGKFISLKTMVKKAIIIAADDPTATARGGVDTPYDLVNSGVLIKYADAGGQVITPTTTGSGTATIVADVQLFVNLAGTPDADSNSPYVDGEPFYYILMDANTAGLADSEHTVDLEQFPAGILATNDGGPQAEVSVVLPQDDED*
Ga0103839_1005626	Ga0103839_10056262	F031118	VVTQSRCEALAETLAEAEKLKMYRSDGTTYCEKCDSLVVRIQSALADVHVEDLTADEIEIIKSIKEKVISEEVFAKSSSILRNPKEWLGTLNE*
Ga0103839_1006141	Ga0103839_10061411	F020468	MPLVKKDITLAAGATSEQILAGTTYEYVSQNTRLIVAATAGDGAGGIAADDSTGVVMNFNVNNAEFSRDAAVSPAITGEAFGWKGNYVMNDMVTTAAERNRPVITFTNNSGAARNVSVAVFIGG*
Ga0103839_1007708	Ga0103839_10077083	F093788	DSDPLNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMYSKITWGNRCDALEAALADLEAA*
Ga0103839_1008240	Ga0103839_10082401	F006548	AELRETLQGLAVDLLALHPVDGMSSVRDGMRTVSGNMDLKTALKAIDHQKLPTDVQAMVKTSSSSKGAFSEESMAKARIALNDLVEKAWVELDDKIIECKEYQEMNRATFDQVVTDISRLVEQITDLERVETESLEGISKMEMQIKDVETEMSKETKIYNYNYAKNSEELTRRQNDLDVFQFILTLTRCPDATSLLQSGLNETRICAVK
Ga0103839_1008264	Ga0103839_10082642	F020014	SYKDDPRPEYAPKKNSVSKPRAASPPTVATIQRGILPISLILIVVIKK*
Ga0103839_1008610	Ga0103839_10086101	F002457	AARKAMFDAVDSKQGAARGWIGAAQFTDWATTHIAGKIAEIDTASEVDFYHVANYAEADFLKAIEVAVTNKNSREYASLYEFLLTAFVETDATCRGEITYAEFNKLIERAAAVPRTFGLAPPEASKEVRKQFFDSMEDKQMGGVTFRLLLAWTIEHSKGKIAAQKAGKGYKK*
Ga0103839_1008869	Ga0103839_10088692	F065416	MSPTRLGYKELRLELVKPLQDQPHKS*QPPIADEKKDEGARDPIKILLEEALERQRNAMMDNFA
Ga0103839_1010208	Ga0103839_10102081	F086309	MNVKQAKAMAFGSDPSGTLDDYYQAWQWLYDHKVELSEADENYMDKLIC
Ga0103839_1012136	Ga0103839_10121361	F004358	ITMLLTTLGATGMGSMLKIVAGTIQSINDSRQQKAQRELARDLAMSNANAAFQKAVFEGGSEQESMFTRGTRRIIALIGMLNFATISILCTIWPSTTLVTFTPPENKESISILFGLVKFPSGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKN*
Ga0103839_1012709	Ga0103839_10127091	F005505	DKSGTYVS*FYDAFLKEIQDAWY*VLYIYVYFFLHHFNGSTVNYFFFER*NIAELDEIRFYGVAPH*YFRPYMGILVISPTHYEGLM*MGLFLGSLACLPLIYNVYNTFNKYVSTIPMQNSILQTTTFTLFMMSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLC*LL
Ga0103839_1014014	Ga0103839_10140141	F042640	LNLSRCTTTTREKSMSSEARKDFDEWFVNHYEELVHTARRFHDFPRDLVHHTYLQCINALESNENILDNLPGYFHTSMWNQAQNLFRKLYEIHETPTSNVVSDYDISEAIKKEEAMIMTNHLAWFDRTVLSLYLDGWSMAQIARESGINVSVLYESISKSKNKLRHVIRQ
Ga0103839_1014099	Ga0103839_10140991	F063725	PAFAYTYQLTGTPAVRPEYYIRERRVVRAEITVERAINMTGLGGTGLIGSAFYIDNVFSD