3300009343: Human stool microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300009343
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053150 | Ga0114310
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88195902
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F067720	Metagenome	125	Y
F067844	Metagenome	125	N
F078693	Metagenome	116	N
F088914	Metagenome	109	N
F090514	Metagenome	108	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114310_100288	Not Available	36510
Ga0114310_100617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	20298
Ga0114310_105848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2029
Ga0114310_108114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1446
Ga0114310_121502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	616
Ga0114310_122940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	583
Ga0114310_126881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114310_100288	Ga0114310_10028868	F067720	MASTTYEHPGGVTEMYAVQEQFRHVTKMVCARFLDLTKTYRLGNVPVMVRNAGQLPQPFWLGASCGGGSGGGARRAAREVGRAGE
Ga0114310_100617	Ga0114310_1006175	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGAKWFVILLTIVPAGSRAWAGSSLSLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG*
Ga0114310_105848	Ga0114310_1058481	F026489	RGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0114310_108114	Ga0114310_1081145	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFG
Ga0114310_121502	Ga0114310_1215021	F078693	MVLAAVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC*
Ga0114310_122940	Ga0114310_1229402	F092227	MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMFLV*
Ga0114310_126881	Ga0114310_1268811	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIAFSAWYAAKALEMNVK*