3300009342: Microbial communities of water from the North Atlantic ocean - ACM59

Overview

Basic Information

• IMG/M Taxon OID: 3300009342
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126426 | Ga0103837
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM59
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42238383
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F002883	Metagenome / Metatranscriptome	523	Y
F004175	Metagenome / Metatranscriptome	449	Y
F009309	Metagenome / Metatranscriptome	319	Y
F010827	Metagenome / Metatranscriptome	298	Y
F011139	Metagenome / Metatranscriptome	294	Y
F036277	Metagenome / Metatranscriptome	170	Y
F090441	Metatranscriptome	108	N
F092219	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103837_1000962	All Organisms → cellular organisms → Bacteria → Proteobacteria	1095
Ga0103837_1001254	Not Available	1012
Ga0103837_1001503	Not Available	959
Ga0103837_1003206	Not Available	764
Ga0103837_1003276	Not Available	758
Ga0103837_1004428	Not Available	691
Ga0103837_1006266	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	621
Ga0103837_1006863	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	604
Ga0103837_1009264	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	547
Ga0103837_1012019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103837_1000962	Ga0103837_10009622	F092219	MKKFITALAATFATVVIGSAASAATPTFNVYHEEVLPALVETNAPATFSVYHEEVLPALVAANTPPTFNVVREEILPAMNRAVASMPVTFAEVYGDIVYHEEVVPVADADPFSEHVVGGLGPQLPYDPMRGVDYGFVQALLQQNADPFAEEIVGGLGPQGDIDPFAEEIVGGLGPQINFVASN*
Ga0103837_1001254	Ga0103837_10012541	F090441	LPNHGLFKNLLSNPKILQKGEVWELATLSFLDSLAFGALVTRRAIVGCQFPDAVSYRKNDCDTFRSHSGT*
Ga0103837_1001503	Ga0103837_10015031	F090441	EVWELATLSFPDSLALGALITRRVIVGCQFPDAALNRKNDCDTFRFHSGT*
Ga0103837_1003206	Ga0103837_10032063	F002883	MSTLHHEDMLLQIFDEVCEAFPYLDEEKQIEIANNRFWELAQ*
Ga0103837_1003276	Ga0103837_10032761	F010827	MWVLLWLQVISGSFDHYHVGSYSSEEACKVAQKEAKVLVTNNNSKVVCIKIER*
Ga0103837_1004428	Ga0103837_10044281	F004175	LKNEDANSKLVEVVTVADVDAEDHVGNSLLIWELTFGHKAEL*
Ga0103837_1006266	Ga0103837_10062661	F011139	MGLFLGLIAGLPFVYNIYNPMNRYAATIPMQNSILQTSAFIFFMLSLFCANSMLPCGRYYYEPEGGYVGNP*
Ga0103837_1006863	Ga0103837_10068632	F009309	TRDITDKKWTLQTLNIEILTFKYYLTVGFDLTVTAAVKKLSVVSPGTATSSVTVQSFEWKSVWVSTATSFFSGNSFDTWFDWASFVVAWVESVVVSVGVVVDLRSRQEEGEERVNKLSFDGTSVSGTVVSVQSVARVSQVNSGSGSWVVGDFPWDTRFTGGLGIDDGALVSIS*
Ga0103837_1008687	Ga0103837_10086871	F000075	IILTWHANRYENMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103837_1009264	Ga0103837_10092641	F011139	MGLFLGSLAFLPVIYNVYNTFNKYVSTIPMQNSILQTTTFTLFMMSLYCANSMLPCGRYYYEPEGGYVGNP*
Ga0103837_1012019	Ga0103837_10120191	F036277	PEPGSNSPLCSNPFVDKSTQYELHSPNKNKIDLSYLGSASLDD*