3300009341: Microbial communities of water from the North Atlantic ocean - ACM17

Overview

Basic Information

• IMG/M Taxon OID: 3300009341
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126425 | Ga0103836
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM17
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42220838
• Sequencing Scaffolds: 12
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	2
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000048	Metagenome / Metatranscriptome	3365	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000076	Metatranscriptome	2620	Y
F000147	Metagenome / Metatranscriptome	1917	Y
F000235	Metatranscriptome	1500	Y
F000287	Metatranscriptome	1370	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003081	Metagenome / Metatranscriptome	508	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103836_1000290	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1409
Ga0103836_1001663	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	893
Ga0103836_1001674	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	891
Ga0103836_1002276	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	822
Ga0103836_1002387	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	810
Ga0103836_1004379	Not Available	688
Ga0103836_1004719	Not Available	675
Ga0103836_1006528	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	617
Ga0103836_1007214	Not Available	598
Ga0103836_1008697	All Organisms → cellular organisms → Eukaryota → Opisthokonta	566

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103836_1000290	Ga0103836_10002901	F001926	VRHEDIPDMSNPKTTKAVLEGDKLIMEVLKGGYNVHPVPPPNSVHKESMTKRYETGRMRIDKLLTLGYTTSADPRKIGTK*
Ga0103836_1001663	Ga0103836_10016631	F014224	MHLNILFSSTLLCIANGAPQYGGVQPSPAAAPLRGQGTVKCVTQYATIWDTEYTETETEVCTTEYEKVCRTETQRLCQPTTRQECSTVYEKQCQTVYRNECVEQFKTEYEPYTETECSTEYKEDCEYQWEGHGNDKVWAPIAGTCKNNPYETCSDVTKSKAVQVPYPVCRDIPEQKCVDVPRQECVQVPDQVCTNQPLQKCQDVPRQACQQIHKKVPNRVSRKVPKKVCQDTGSHLNGVAVGNGPVVIDARKNEKSVQFEEGVETPNSIVFGD*
Ga0103836_1001674	Ga0103836_10016741	F011139	MGLFLGLLAFLPLVYNFYNTFSKYVATIPMQNSVLQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*
Ga0103836_1002243	Ga0103836_10022431	F000052	GPGADGKRCIDKVEMVEETEYDDVVQCDHSYDKRCHTTYVTNYESQQEEECEENFRKSCFIEYEQIAFNETVAVCRTPLVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVSCTTEVEEKCEDETSGYTTNTKCSKWPKEVCSVEKKAVKKYTPITGCTKEPREICAPAGCGFKEGAEECYDKTQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLEPSEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPTEESGLA*
Ga0103836_1002276	Ga0103836_10022761	F041786	QDGKIDAETFRAQLMTFGNKFSASEVDDAFAEFQIDGGMIDAAHLKGLMVSK*
Ga0103836_1002387	Ga0103836_10023871	F000287	GGAWRRPRMKVYDYNQEFGGNYYQPMIQYINKKDIYGPFHKRTEVYLPHSAEVTSDKYTNMRYQDKSSAKHNLDEFLKNAYSKQIKELNGTTAMARVNLMKNIVSNRRQPHSPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIEKKHNTKLSDKQRKHLVMLEACDDEYNYHYKLFGQGAVDRDMKFFAPQLVQDYVNQIRRF*
Ga0103836_1004243	Ga0103836_10042431	F000048	NKMTTHAEADAEVAALKARFDAVKAISETWVKKCDVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEGL*
Ga0103836_1004379	Ga0103836_10043791	F005202	KELNVLDASNNIDVQAMKRDIQKYTMPSEWFKNKYEHLLDTCYEMATNLPADIAENSVVTGDSFGTVKLGEVKMFTKCCEKAKTKLCMHQDIKKKVESNFGPMEDILQETQLTEHEFFPLVMQLLHGKEMDYMTGGM*
Ga0103836_1004719	Ga0103836_10047191	F012568	DGLIEVTEEDFAEFLEDFDEFKDHVASKMSALTCVLAKMNMLDSNLQVNLKAYTEDVWNDIDLSQTLAGEDPVWRKMMVDGYNDCYDIARAFPQSALNKNPIMKVFGRHMVFFKCSKKVEAHNCGMAQANHMIETLYGSNDGGYDWSQHGLPNNKYERAAMYMKVQYGTATPEEKFVHNFFYMDPAM*
Ga0103836_1004971	Ga0103836_10049711	F000021	DNIHKYYYLIAFTAYMREAADAARNLVPDDKKAELTLTGGKCAIPANQLKLSRKFAAFMEENKKLIDLCETGKGNLQWERDIPPAALKNLEDLAKGDFKANLGKIIHDIYQTAHIMFSDMPQGDHKKRAKYRFASKTLMRILPAKEKAEVEGLIEKKTITLDLYEILGKCTWTPV*
Ga0103836_1006528	Ga0103836_10065281	F003495	MKEINENNIPDEHEISKDTNAPPKDTAALDKRSVLANVNSTGSGI*
Ga0103836_1007214	Ga0103836_10072142	F062416	TGAASEEVWIEPVEMDLADDADQIEIAIAFEQRALYSPKLVHRKTQDGEYSEVTDAKYETQTDANGNDQTVAMALVNEGGAYVVEDEVNVGAVVAIVFAGLVFIGAIMFIVWWKFFKSPPAADEYSVNYASGTTTA*
Ga0103836_1007335	Ga0103836_10073351	F085736	Y*TLYVFVYF*LHHFTPSTVNYFFFER*NIAELDEIRFYAVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLSALPIIYNWYNSNNNYLPIIPMQSSLLQTSGFILFMLSMYCVSSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLG*FLHHLDLIEHYSFQYAQHILRRHSNLRKVARARLNTPILDRVAES
Ga0103836_1008697	Ga0103836_10086971	F004957	IMNVLAVFLSLLVSVTCLKPCPGDTRGDRRCNHDSTHRVCAKIGVEGTSFWEFTGQRSWCGTIGNYGGPYGSLPRCPPEEPTWCICKWATARWIAGEGCGDAVEFDCDATDVCDLKASYLDFNVDLKPAHDCMEKKCKKQWDACPDNRVSNGV*
Ga0103836_1008715	Ga0103836_10087151	F000076	GQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPCTAETTVGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI*
Ga0103836_1009122	Ga0103836_10091221	F003081	MPEPGLVIELREEMFNDTRYGAEVYYMHVRGVDTLMVLSYVHILKKIFLKNYVTSESDG*
Ga0103836_1011183	Ga0103836_10111831	F000073	VFAGYMREQAAAAREAVEADKKADVALPASGKCSIPATDLKVSRTFVQFMEENASLRTLIDTGKGNLQWERDIPPEALANLEGLAAKDFAGNLGKIIHDIYQTAHVMFGDMPQGDHKKRAKYRFASKTLMRILPADKKTEVEGLIAKSEMTMDLYEILGKCPWTQPK*
Ga0103836_1011347	Ga0103836_10113471	F000235	VAAAVLASAVSAATVLQGREQLVKAFGTKNIKFDPKTKTNFCNQCHEITVSSTGGTLEHQPQRLGKYVVDGSIWEDMIPFWKSANNQYITPDPNSNPIMYYIKWVVSESVGGFNAGLMNDAYTDGYNCPYEIADQWQYEYQRQWFVDPTLKFTCTKTRDD*
Ga0103836_1011476	Ga0103836_10114761	F000147	GTWINSNMFIATWKKIQEEGLWQDKDWTVKVDVDAIFLPSRLRTYVQNKEVTPNGMYFENCKYVNFGFFGSLEVLSHDAAATYMENLDDCKTSLNYLGREKLYGNEPWGEDLFAQRCMDLHGVDKVDAFDLNTDAACAAWRPEGQKKNMKWLPDCATVKTPAMHHFKTPKLYF